BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF12RM1.SCF screened BAC_end
(1006 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1435 0.0
>3x_Contig1746
Length = 26672
Score = 1435 bits (724), Expect = 0.0
Identities = 794/811 (97%), Gaps = 5/811 (0%)
Strand = Plus / Plus
Query: 47 tccatctacaaaagcatgagataaagcttctgtggtctgagcttctgatagacccaacat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22235 tccatctacaaaagcatgagataaagcttctgtggtctgagcttctgatagacccaacat 22294
Query: 107 cttggaaaccacagcagtggtagcaactttgaccaaaacaacgtggtccaatcctacctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22295 cttggaaaccacagcagtggtagcaactttgaccaaaacaacgtggtccaatcctacctt 22354
Query: 167 attaaaggaattctccaaggcaataataccttgaatctcatgtgctttgatcatagcttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22355 attaaaggaattctccaaggcaataataccttgaatctcatgtgctttgatcatagcttc 22414
Query: 227 taacacatctttcacggtgaataatcttccctcatcacctccggtggcctttgacaatct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22415 taacacatctttcacggtgaataatcttccctcatcacctccggtggcctttgacaatct 22474
Query: 287 agttaaatgatctgccacggcaagaataccacctaaattatcagagggatgtccccactc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22475 agttaaatgatctgccacggcaagaataccacctaaattatcagagggatgtccccactc 22534
Query: 347 tgcagctaaccaacaatcattgaaatccaaccaacgaattaaagttccgatagcaaacgc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22535 tgcagctaaccaacaatcattgaaatccaaccaacgaattaaagttccgatagcaaacgc 22594
Query: 407 acctttcacagggtccattctatatttagtacccaacactttggtaccgttaggtacaat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22595 acctttcacagggtccattctatatttagtacccaacactttggtaccgttaggtacaat 22654
Query: 467 cgtgccaggcacaattggcttgataaggtttttaggttgatcatatttcaaagcagccaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22655 cgtgccaggcacaattggcttgataaggtttttaggttgatcatatttcaaagcagccaa 22714
Query: 527 accacaacctaatgtgtccaataaacagagccttgcagtttcataggcttctggagaagt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22715 accacaacctaatgtgtccaataaacagagccttgcagtttcataggcttctggagaagt 22774
Query: 587 gatacctttattgtgaaacat-agaagaaatttttctttatacttcatctgcttctggnc 645
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct: 22775 gatacctttattgtg-aacataagaagaaatttttcttaatacttcatctgcttctggtc 22833
Query: 646 tcttattatcgatgttaatggctttctgagaatagtaatttttcatactattcaattgag 705
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22834 tcttattatcgatgttaatggcttcctgagaatagtaatttttcatactattcaattgag 22893
Query: 706 ttgcaataccgttattaacgaatgttgttggcctcttgaatgataatctggctatattgt 765
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 22894 ttgcaataccgttattaacgaatgtcgttggcctcttgtatgataatctggctatattgt 22953
Query: 766 t-acacttgatcttactgattgacgtagcattgttaacttaattttgttggaaactcttt 824
| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 22954 taacacttgatctagctgattgacgtagcattgttaacttaattttgtttgaacttcttt 23013
Query: 825 -tttactacttctttaatc-aaatgtcaatt 853
| |||||||||| ||||| |||||||||||
Sbjct: 23014 ctatactacttctctaatcaaaatgtcaatt 23044
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7533
Number of Sequences: 1807
Number of extensions: 7533
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)