BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG01FM1.SCF screened BAC_end
(1067 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1226 739 0.0
>3x_Contig1226
Length = 5066
Score = 739 bits (373), Expect = 0.0
Identities = 444/457 (97%), Gaps = 8/457 (1%)
Strand = Plus / Plus
Query: 271 taataatcatacagagtcttctctgaatggccttttttgatgacatttcggaatttaaac 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taataatcatacagagtcttctctgaatggccttttttgatgacatttcggaatttaaac 60
Query: 331 tggaaacattcccaattttgtttttactcttgcttctcatcttaatgatcttctccaatt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggaaacattcccaattttgtttttactcttgcttctcatcttaatgatcttctccaatt 120
Query: 391 ccttgtttaactgcttttctgtgagcattcctccagatctataacgattctgattggaga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccttgtttaactgcttttctgtgagcattcctccagatctataacgattctgattggaga 180
Query: 451 gaccttcaagaccattccatatccctaaaacgccttcgtagcctaaatctaagtctcctg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaccttcaagaccattccatatccctaaaacgccttcgtagcctaaatctaagtctcctg 240
Query: 511 aaaccattgttccgtcagctatggatgccttcgctatcgccatccatctccaagtattgc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaccattgttccgtcagctatggatgccttcgctatcgccatccatctccaagtattgc 300
Query: 571 gaatgtagatattgttattgaagttatcgggatttattcatcattttgacagttttcatt 630
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct: 301 gaatgtagatattgttattgaagttatc-ggatttatccatcatttcgacagttttcatt 359
Query: 631 ggatcaagacccatattccagacttcgcgccgtttaccgcattataagaacttatatcat 690
||||||||| |||||| |||||| ||||| |||||| |||||||||| ||||||||||||
Sbjct: 360 ggatcaaga-ccatatcccagac-tcgcg-cgttta-cgcattataa-aacttatatcat 414
Query: 691 tcctggaacagcttcctctgcctcgaagtaaaactct 727
| ||| |||||||| ||||||||||| ||||||||||
Sbjct: 415 t-ctgtaacagctt-ctctgcctcgatgtaaaactct 449
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6750
Number of Sequences: 1807
Number of extensions: 6750
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 1067
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1051
effective length of database: 10,329,639
effective search space: 10856450589
effective search space used: 10856450589
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)