BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG01RM1.SCF screened BAC_end
(1004 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1463 0.0
>3x_Contig1735
Length = 19486
Score = 1463 bits (738), Expect = 0.0
Identities = 860/891 (96%), Gaps = 9/891 (1%)
Strand = Plus / Plus
Query: 48 atcaaacctcctttt-aatgtcctagtttgcctgtaatttaatccagatcgcctattaaa 106
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15455 atcaaacctccttttcaatgtcctagtttgcctgtaatttaatccagatcgcctattaaa 15514
Query: 107 ctccttgagcaaagtgttccatgatttcatcctatggctatgtgtttgaagatgtggctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15515 ctccttgagcaaagtgttccatgatttcatcctatggctatgtgtttgaagatgtggctt 15574
Query: 167 gtattctcccaaaagagacaccaagagttcatccaaattagaatgcgaatatatgtgtga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15575 gtattctcccaaaagagacaccaagagttcatccaaattagaatgcgaatatatgtgtga 15634
Query: 227 catgtaggttagatttcgatattaaaaagtagcagaaaagggaagtatcaaggtgtgata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15635 catgtaggttagatttcgatattaaaaagtagcagaaaagggaagtatcaaggtgtgata 15694
Query: 287 acttcacaccgcaattcagtgtgacaatatactgtttcaagtcacacctaactcatattt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15695 acttcacaccgcaattcagtgtgacaatatactgtttcaagtcacacctaactcatattt 15754
Query: 347 ctcatcctctcaatttcttcttgcatgtatcttatctgaaccggtatacgctgattagaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15755 ctcatcctctcaatttcttcttgcatgtatcttatctgaaccggtatacgctgattagaa 15814
Query: 407 tttacctttttctttaaaagttatgaaaagtgatattggaacaaagttactattaccaac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15815 tttacctttttctttaaaagttatgaaaagtgatattggaacaaagttactattaccaac 15874
Query: 467 tttaatgagatacggaagaattcactggaaataggttactgtagagagtaagttcactag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15875 tttaatgagatacggaagaattcactggaaataggttactgtagagagtaagttcactag 15934
Query: 527 ttgaaagaggatacctatcaacacaacttgtgaatctatccaggtaatttttcggacaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15935 ttgaaagaggatacctatcaacacaacttgtgaatctatccaggtaatttttcggacaca 15994
Query: 587 tgataaanagctggacccgtgttgttaaaagatcggcctcgcaactatctgctacgcaat 646
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15995 tgataaaaagctggacccgtgttgttaaaagatcggcctcgcaactatctgctacgcaat 16054
Query: 647 tcaaacgtattattggtgcgtcatcaatccaatcaaactctagttactctactgattcat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16055 tcaaacgtattattggtgcgtcatcaatccaatcaaactctagttactctactgattcat 16114
Query: 707 tagaacaacagtacaaggacaagcttttggac-aggctcgcgaacangggtttaatagca 765
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct: 16115 tagaacaacagtacaaggacaagcttttggacaaggctcgcgaacaaggttttaatagca 16174
Query: 766 ttgaggaaacttagaaatcttttgaagaagaaattg-aaagaagaaactcgaggttaaca 824
|||||||| | |||| ||||| |||||||||||| |||||||||||||||| | ||||
Sbjct: 16175 ttgaggaacttaagaattctttgaaagaagaaattgaaaagaagaaactcgagttaaaca 16234
Query: 825 gaaatgattcactg-aagaatttggagactacg-acaaagaacc-aaatgtcatct-aca 880
||| |||| ||||| ||||||| | |||||||| |||||||||| ||||||||||| |||
Sbjct: 16235 gaattgatccactgaaagaattggaagactacgaacaaagaaccaaaatgtcatctaaca 16294
Query: 881 ttgcttagatccgtggttcgattgattcatttttgc--aaacagccgttta 929
||||| || ||||||| |||||||| ||| | ||| |||||||||||||
Sbjct: 16295 ttgctaagtcccgtggtccgattgatccatctatgccaaaacagccgttta 16345
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8187
Number of Sequences: 1807
Number of extensions: 8187
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)