BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG02FM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig634 1070 0.0
>3x_Contig634
Length = 1748
Score = 1070 bits (540), Expect = 0.0
Identities = 574/585 (98%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 87 ctgaagcacacctagtgtggacaatggatctctgcttctctatcgcctactgtttttccg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctgaagcacacctagtgtggacaatggatctctgcttctctatcgcctactgtttttccg 613
Query: 147 tttcgtaaccccatgcctttgtttacattttaactaatcttaattattgatgatttcatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tttcgtaaccccatgcctttgtttacattttaactaatcttaattattgatgatttcatt 673
Query: 207 tgaagtaacgggaaaagttgcttggtagataaggcacgtagaggtcaggaagcttgcaac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgaagtaacgggaaaagttgcttggtagataaggcacgtagaggtcaggaagcttgcaac 733
Query: 267 atcaaaagattaatgcttagatgacttccatggagagctgaaattatatgaatattaata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atcaaaagattaatgcttagatgacttccatggagagctgaaattatatgaatattaata 793
Query: 327 tatttgtttgattggtaccttgtatgttgtttatgtgtatatttatatgttaataataca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatttgtttgattggtaccttgtatgttgtttatgtgtatatttatatgttaataataca 853
Query: 387 tagtaccaactctggtgcacttgtaagatacctatgcagtgtaagaaaggaaggtgggaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tagtaccaactctggtgcacttgtaagatacctatgcagtgtaagaaaggaaggtgggaa 913
Query: 447 atttcttcaattactcatggcctgagcgttgaagttttttgatcgtgactgatatcttct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 atttcttcaattactcatggcctgagcgttgaagttttttgatcgtgactgatatcttct 973
Query: 507 aaaacttgatgtataacttctttttgcagtctcttctcgttctgatcctgtgagttttct 566
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 974 aaaacttgatgtataacttcttcttgcagtctcttctcgttctgatcttgtgagttttct 1033
Query: 567 tcgngggcagaattttgattctcaccagaatcatctttgccattttcttctgtttgtggc 626
||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tcgtggtcagaattttgatcttcaccagaatcatctttgccattttcttctgtttgtggc 1093
Query: 627 ttagattcttga-ttatggcangtggaccgtattgttggngctgg 670
| |||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 1094 tcagattcttgagttatggcaggtggagcgtattgttggtgctgg 1138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9803
Number of Sequences: 1807
Number of extensions: 9803
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)