BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG02RM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1695 1392 0.0
>3x_Contig1695
Length = 14630
Score = 1392 bits (702), Expect = 0.0
Identities = 804/831 (96%), Gaps = 6/831 (0%)
Strand = Plus / Minus
Query: 43 acaagcttanttgccgaatccatcattcataacttagaaccatttagttcacctcaaact 102
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6107 acaagctta-ttgccgaatccatcattcataacttagaaccatttagttcacctcaaact 6049
Query: 103 ggtaccatcatcgattgcaaggaaaaaatgaccaagaaatatatcgatgcgattggttct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048 ggtaccatcatcgattgcaaggaaaaaatgaccaagaaatatatcgatgcgattggttct 5989
Query: 163 acattgattgatggtgctgttaataagaaaaccaacgaaccgtggttcgtttatactccg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5988 acattgattgatggtgctgttaataagaaaaccaacgaaccgtggttcgtttatactccg 5929
Query: 223 atgcatggagtaggttttgagatttttgaaagtatcagtaaacaacttttatcccttgaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5928 atgcatggagtaggttttgagatttttgaaagtatcagtaaacaacttttatcccttgaa 5869
Query: 283 gaaggtaaagattacttagtaatagaagagcagaagtatccagatgctgatttccccacg 342
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5868 gaaggtaaagattacttagtagtagaagagcagaagtatccagatgctgatttccccacg 5809
Query: 343 gtgtctttccctaacccagaagaaaaaggtgctttggatctagccgttgaatatggaagg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5808 gtgtctttccctaacccagaagaaaaaggtgctttggatctagccgttgaatatggaagg 5749
Query: 403 aagaacgatactgtcgacctaattatagccaatgatccagatgccgataggtttagtgtc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5748 aagaacgatactgtcgacctaattatagccaatgatccagatgccgataggtttagtgtc 5689
Query: 463 gcagtaagggacaacgatcaaaatacaactacagcttggagacaattgaccggaaacgag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5688 gcagtaagggacaacgatcaaaatacaactacagcttggagacaattgaccggaaacgag 5629
Query: 523 attggattcttgtttgcatactatgaatgggaaaggtacaagcatagtcctatcgacgaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5628 attggattcttgtttgcatactatgaatgggaaaggtacaagcatagtcctatcgacgaa 5569
Query: 583 ccgcttgcgatgttgaactcaactgtttcttcacagatgatcaagcgtatggctgaaata 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5568 ccgcttgcgatgttgaactcaactgtttcttcacagatgatcaagcgtatggctgaaata 5509
Query: 643 gaagggttccattacgaggatacgctaactgngttcaaatggctttggaatcgcgcactt 702
||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct: 5508 gaagggttccattacgaggatacgctaactgggttcaaatggcttggaaatcgcgcactt 5449
Query: 703 gagctagaacnnagaggatactatacgccattcgcatacgaagaagctattaggtacatg 762
|||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 5448 gagctagaacaagagggatactatacgccattcgcatacgaggaagctatagggtacatg 5389
Query: 763 ttttcatctgttggttacgacaaagaacgaatcagcgctgccatcgttttttttcaag-c 821
||||||||||| | | |||||||||| ||||||||||||||||||| ||| |||||| |
Sbjct: 5388 ttttcatctgtggttcacgacaaagacggaatcagcgctgccatcgtctttcttcaagcc 5329
Query: 822 tattc-aaattgcgtgcgagt-gtcagactg-gctggat-ttttggccaca 868
||||| || | |||||||||| ||||||||| ||||||| |||||||||||
Sbjct: 5328 tattcgaagtggcgtgcgagtggtcagactgtgctggatattttggccaca 5278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6858
Number of Sequences: 1807
Number of extensions: 6858
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)