BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG03FM1.SCF screened BAC_end
(1061 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig911 950 0.0
>3x_Contig911
Length = 4722
Score = 950 bits (479), Expect = 0.0
Identities = 516/527 (97%), Gaps = 1/527 (0%)
Strand = Plus / Plus
Query: 90 aagtcggttgcttgtgataacgtgcggtacatcccaggggaaagatgagatattccagta 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 aagtcggttgcttgtgataacgtgcggtacatcccaggggaaagatgagatattccagta 1202
Query: 150 tatcccaataatgaactgtatattctcggcaaccaaaatgaaatgttccatcgatgtggt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 tatcccaataatgaactgtatattctcggcaaccaaaatgaaatgttccatcgatgtggt 1262
Query: 210 taagattggtgggggtatagaaagcactttcttgcaacaagcaactgatgccactagtgg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 taagattggtgggggtatagaaagcactttcttgcaacaagcaactgatgccactagtgg 1322
Query: 270 ggtgtacttacatgtagaaaacacaagaggtttaattcaatatttatcaacggccatgtt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 ggtgtacttacatgtagaaaacacaagaggtttaattcaatatttatcaacggccatgtt 1382
Query: 330 tatagatccgtctttgagaaatgtgataattaaaccaaatcaagggtctgtcgattttag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 tatagatccgtctttgagaaatgtgataattaaaccaaatcaagggtctgtcgattttag 1442
Query: 390 aacttcatgttttctaacgggtaaagtggtcgctgtcggatttgtgtgtagtgtttgctt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 aacttcatgttttctaacgggtaaagtggtcgctgtcggatttgtgtgtagtgtttgctt 1502
Query: 450 atgtgtgctttcagtgatacctccaggtcagaaatgtcctgcttgtgactcgccgtttga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 atgtgtgctttcagtgatacctccaggtcagaaatgtcctgcttgtgactcgccgtttga 1562
Query: 510 caagtagattatcgccagacttagaagaaagcctgtattgagcaatggtgtaccgaagaa 569
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 cagtaagattatcgccagactcagaagaaagcctgtattgagcaatggtgtaccgaagaa 1622
Query: 570 agaaaatgttagtaataaatacattcgggggtttttcatacctattt 616
||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1623 gaaaaatgttagtaataaatagcatc-ggggttttccatacctattt 1668
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6622
Number of Sequences: 1807
Number of extensions: 6622
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 1061
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1045
effective length of database: 10,329,639
effective search space: 10794472755
effective search space used: 10794472755
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)