BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZG03RM1.SCF screened BAC_end
         (986 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1681                                                         997   0.0  

>3x_Contig1681 
          Length = 11798

 Score =  997 bits (503), Expect = 0.0
 Identities = 556/571 (97%), Gaps = 2/571 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   accgtttgatttgttctctacaattgtgtatggtaacacatccaaatccttttgtgtctc 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4885 accgtttgatttgttctctacaattgtgtatggtaacacatccaaatccttttgtgtctc 4944

                                                                        
Query: 107  tgaatcctggaaagatctcccgattaatctcttagtagcaaagaaggtattctccgaatt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4945 tgaatcctggaaagatctcccgattaatctcttagtagcaaagaaggtattctccgaatt 5004

                                                                        
Query: 167  aattagtgactgtctcttcgctgctgctccgactaaaactttcccgttcttatcaaatgc 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5005 aattagtgactgtctcttcgctgctgctccgactaaaactttcccgttcttatcaaatgc 5064

                                                                        
Query: 227  aacgactgatggtgttgttctttgtccctcgtcattctcaatgattgatgctgacttttt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5065 aacgactgatggtgttgttctttgtccctcgtcattctcaatgattgatgctgacttttt 5124

                                                                        
Query: 287  atcgtttgaatccctaatgtaggcaacagcactgttggtggtccctaaatctattccgat 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5125 atcgtttgaatccctaatgtaggcaacagcactgttggtggtccctaaatctattccgat 5184

                                                                        
Query: 347  cactttggtactggcatatctcacacacctgttactgaagaattttgcagtttgaggcct 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5185 cactttggtactggcatatctcacacacctgttactgaagaattttgcagtttgaggcct 5244

                                                                        
Query: 407  gagtcttagcattgttgtttgtatatgtacagcgtggcttatactgtatggcttaacttg 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5245 gagtcttagcattgttgtttgtatatgtacagcgtggcttatactgtatggcttaacttg 5304

                                                                        
Query: 467  caggatagtatcttttccattaatgatctaccttggacgaatacatt-gtgtcactggat 525
            ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 5305 caggatagtatcttttcaattaatgatctaccttggacgaatacattggtgtcactgaat 5364

                                                                        
Query: 526  tgctaaaaagaagtatgctttttttttttagggattatccattttgccccttttgaaaaa 585
            ||||||| |||||||||||||||||||||||| ||||| |||| ||| | || |||||||
Sbjct: 5365 tgctaaagagaagtatgctttttttttttaggtattatacattatgcacattatgaaaaa 5424

                                           
Query: 586  atttgggtcaatggaactggaaacttgccgg 616
            || |||||| |||  ||||||| ||||||||
Sbjct: 5425 atatgggtc-atgtgactggaagcttgccgg 5454


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,834
Number of Sequences: 1807
Number of extensions: 22834
Number of successful extensions: 2227
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)