BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC1ZG03RM1.SCF screened BAC_end (986 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1681 997 0.0 >3x_Contig1681 Length = 11798 Score = 997 bits (503), Expect = 0.0 Identities = 556/571 (97%), Gaps = 2/571 (0%) Strand = Plus / Plus Query: 47 accgtttgatttgttctctacaattgtgtatggtaacacatccaaatccttttgtgtctc 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4885 accgtttgatttgttctctacaattgtgtatggtaacacatccaaatccttttgtgtctc 4944 Query: 107 tgaatcctggaaagatctcccgattaatctcttagtagcaaagaaggtattctccgaatt 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4945 tgaatcctggaaagatctcccgattaatctcttagtagcaaagaaggtattctccgaatt 5004 Query: 167 aattagtgactgtctcttcgctgctgctccgactaaaactttcccgttcttatcaaatgc 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5005 aattagtgactgtctcttcgctgctgctccgactaaaactttcccgttcttatcaaatgc 5064 Query: 227 aacgactgatggtgttgttctttgtccctcgtcattctcaatgattgatgctgacttttt 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5065 aacgactgatggtgttgttctttgtccctcgtcattctcaatgattgatgctgacttttt 5124 Query: 287 atcgtttgaatccctaatgtaggcaacagcactgttggtggtccctaaatctattccgat 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5125 atcgtttgaatccctaatgtaggcaacagcactgttggtggtccctaaatctattccgat 5184 Query: 347 cactttggtactggcatatctcacacacctgttactgaagaattttgcagtttgaggcct 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5185 cactttggtactggcatatctcacacacctgttactgaagaattttgcagtttgaggcct 5244 Query: 407 gagtcttagcattgttgtttgtatatgtacagcgtggcttatactgtatggcttaacttg 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5245 gagtcttagcattgttgtttgtatatgtacagcgtggcttatactgtatggcttaacttg 5304 Query: 467 caggatagtatcttttccattaatgatctaccttggacgaatacatt-gtgtcactggat 525 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || Sbjct: 5305 caggatagtatcttttcaattaatgatctaccttggacgaatacattggtgtcactgaat 5364 Query: 526 tgctaaaaagaagtatgctttttttttttagggattatccattttgccccttttgaaaaa 585 ||||||| |||||||||||||||||||||||| ||||| |||| ||| | || ||||||| Sbjct: 5365 tgctaaagagaagtatgctttttttttttaggtattatacattatgcacattatgaaaaa 5424 Query: 586 atttgggtcaatggaactggaaacttgccgg 616 || |||||| ||| ||||||| |||||||| Sbjct: 5425 atatgggtc-atgtgactggaagcttgccgg 5454 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 22,834 Number of Sequences: 1807 Number of extensions: 22834 Number of successful extensions: 2227 Number of sequences better than 1.0e-20: 1 length of query: 986 length of database: 10,358,551 effective HSP length: 16 effective length of query: 970 effective length of database: 10,329,639 effective search space: 10019749830 effective search space used: 10019749830 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)