BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG04RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1441 0.0
>3x_Contig1762
Length = 22098
Score = 1441 bits (727), Expect = 0.0
Identities = 822/845 (97%), Gaps = 7/845 (0%)
Strand = Plus / Plus
Query: 41 cttgcgaaaaggcctttttttgtacatattgcagttgattgtacgcttgcccgcaggtta 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13667 cttgcgaaaaggcctttttttgtacatattgcagttgattgtacgcttgcccgcaggtta 13726
Query: 101 gaaaattggcgaaacgcgttaaacgacgggacaaacgttgttgtcaatggtggttcaaaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13727 gaaaattggcgaaacgcgttaaacgacgggacaaacgttgttgtcaatggtggttcaaaa 13786
Query: 161 ggcaaggaccatgctcctttgaactgtcatagtattgagcaaatacttgaaagtatggat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13787 ggcaaggaccatgctcctttgaactgtcatagtattgagcaaatacttgaaagtatggat 13846
Query: 221 tttttcgattacgcaaaggaggattcgctaacgtctattaacgaacgctctcttattaaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13847 tttttcgattacgcaaaggaggattcgctaacgtctattaacgaacgctctcttattaaa 13906
Query: 281 gttgtatttcattctacggtaccgttcgaatcggtgaaaaaacagctatatgagcaatta 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13907 gttgtatttcattctacggtaccgttcgaatcggtgaaaaaacagctatatgagcaatta 13966
Query: 341 aacaacgtaatagattcaaagtcgctgacagcaccattaagaccgtgttgggatacgtat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13967 aacaacgtaatagattcaaagtcgctgacagcaccattaagaccgtgttgggatacgtat 14026
Query: 401 tttatgaaattggcgaacttggctgcgtcaagagccaactgtatgaaacgtagggttggt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14027 tttatgaaattggcgaacttggctgcgtcaagagccaactgtatgaaacgtagggttggt 14086
Query: 461 tgtgtcatcgtacgggactgcagagtcgtagcaactggatacaatgggactccaaggaat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14087 tgtgtcatcgtacgggactgcagagtcgtagcaactggatacaatgggactccaaggaat 14146
Query: 521 atgaagaactgcaaccagngtggatgttcaagatgtaacgatggggatgataagtcgttg 580
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14147 atgaagaactgcaaccagggtggatgttcaagatgtaacgatggggatgataagtcgttg 14206
Query: 581 catacttgtctatgcttgcatgctgaag-aaacgcgttgttag-agcgggtagagacagg 638
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 14207 catacttgtctatgcttgcatgctgaagaaaacgcgttgttagaagcgggtagagacagg 14266
Query: 639 ggtcggccaaacgctatattatactgcgatacatgtccctgcctgacatgttcagtgaag 698
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14267 gtcgggccaaacgctatattatactgcgatacatgtccctgcctgacatgttcagtgaag 14326
Query: 699 atcgttc-aacaggcattaaagaggtagtttattcacatttctatagaatggacgaac-a 756
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 14327 atcgttcaaacaggcattaaagaggtagtttattcacattcctatagaatggacgaacaa 14386
Query: 757 agtctgaaggttct-agggacggtaaagtgaccgtangggcacacaagttgatcgacgaa 815
|||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |
Sbjct: 14387 agtctgaaggttctaagggacggtaaagtgaccgtaaggcaacacaagttgatcgacg-a 14445
Query: 816 acgta-cacttatcacattggaagaacagatttatcgtggcctatgtaatatttgtagag 874
||||| |||| ||||| |||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 14446 acgtaccactatccacatcggaagaacagatatatcggtgcctaggtaatatttgtagag 14505
Query: 875 ttgat 879
|||||
Sbjct: 14506 ttgat 14510
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5704
Number of Sequences: 1807
Number of extensions: 5704
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)