BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG05FM1.SCF screened BAC_end
(1036 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 1659 0.0
>3x_Contig1606
Length = 11468
Score = 1659 bits (837), Expect = 0.0
Identities = 922/943 (97%), Gaps = 6/943 (0%)
Strand = Plus / Plus
Query: 85 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5880 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 5939
Query: 145 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5940 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 5999
Query: 205 caacacgtatantcgctaatttgttagcaacacacctgcccttaaagtacgagtgatcgc 264
||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 6000 caacacgtata-tcgctaacc-gctagcaacacacctgcccttaaagtacgagtgatcgc 6057
Query: 265 agcactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaaca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6058 agcactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaaca 6117
Query: 325 aaatagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6118 aaatagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacga 6177
Query: 385 tgtgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6178 tgtgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggg 6237
Query: 445 ggaagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6238 ggaagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagc 6297
Query: 505 gatataattccccgccttccgttgtttacctcctccctctcttcattcttagcttaagaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298 gatataattccccgccttccgttgtttacctcctccctctcttcattcttagcttaagaa 6357
Query: 565 gaaattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccataaagcg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6358 gaaattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccataaagcg 6417
Query: 625 gcagctgcgtaagcagcgttagtcaaagtctggttggattgctgttgatgcaatcttttt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6418 gcagctgcgtaagcagcgttagtcaaagtctggttggattgctgttgatgcaatcttttt 6477
Query: 685 tcttcttcagattgttgctgaggtaggccaaacattattattgattgtatttctgatata 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478 tcttcttcagattgttgctgaggtaggccaaacattattattgattgtatttctgatata 6537
Query: 745 cgtcacaatcttttttaactggttagactgcgctaataactataccaatagatagtgata 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6538 cgtcacaatcttttttaactggttagactgcgctaataactataccaatagatagtgata 6597
Query: 805 taatgcactcatgcagcagcaaaacatgtttgtgcatactcaaatattctacaaggtatt 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6598 taatgcactcatgcagcagcaaaacatgtttgtgcatactcaaatattctacaatgtatt 6657
Query: 865 tgattccaaatcttntaatttntggaaaattcacatcacttggtacgtcagtgtcacaag 924
|||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||
Sbjct: 6658 tgattccaaatctt-taaattttggaaatttcacatcacttggtacgtcagtgtcacaag 6716
Query: 925 accgggatntgaagccttcatgaaatttacaattctgttcatagagaaaagagcatc-ag 983
|| |||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 6717 acacggatttgaagccttcatgaaatttacaattctgtcaatagag-aaagagcatcaag 6775
Query: 984 ctaaaagacaacttagtgaatagga-gttactcgccgtgactg 1025
|||||||||||||||| |||||| |||||||||||||||||
Sbjct: 6776 ctaaaagacaacttaggtgataggaggttactcgccgtgactg 6818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7156
Number of Sequences: 1807
Number of extensions: 7156
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 1036
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1020
effective length of database: 10,329,639
effective search space: 10536231780
effective search space used: 10536231780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)