BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG06FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 987 0.0
>3x_Contig1687
Length = 12800
Score = 987 bits (498), Expect = 0.0
Identities = 563/581 (96%), Gaps = 3/581 (0%)
Strand = Plus / Plus
Query: 89 gcgaagggctagcactaccagcagcacttgccaactcagataaccttgaactatcaacgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4113 gcgaagggctagcactaccagcagcacttgccaactcagataaccttgaactatcaacgt 4172
Query: 149 gttggaaactgttgttatttttattattaccattagtattattgtcattattattattgt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4173 gttggaaactgttgttatttttattattaccattagtattattgtcattattattattgt 4232
Query: 209 taaggttactgctatttttctttgtattgatattatggtcattaatattacttttgatgt 268
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4233 taaggttactgctatgattcacggtattgatattatggtcattaatattacttttgatgt 4292
Query: 269 tgttgacattgggaataggagtatcaagacctccgacaggcatagtatccatgacgctgc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293 tgttgacattgggaataggagtatcaagacctccgacaggcatagtatccatgacgctgc 4352
Query: 329 cttcttgtttaacttttgccctagattttttattcgatgggacaggaacggtactgcctt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4353 cttcttgtttaacttttgccctagattttttattcgatgggacaggaacggtactgcctt 4412
Query: 389 ctgttgttgttgcaccaacatgcctattatcttgttcgttagccgtacccgttcttgatc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4413 ctgttgttgttgcaccaacatgcctattatcttgttcgttagccgtacccgttcttgatc 4472
Query: 449 ctctagtaacagtagccacactagactgcggcgatgactgctctnctacagccccgtcat 508
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4473 ctctagtaacagtagccacactagactgcggcgatgactgctctcctacagccccgtcat 4532
Query: 509 acccatatttggcaggctggattcatttcacacctgctttc-aacccgcggtgcaactgg 567
|||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||
Sbjct: 4533 acccatatttggcaggctggatacatttcacacctgctttcaaacacgcggtgcaactgg 4592
Query: 568 gaatcttgtgatcacacttttgtttccgccgttgac-ccaccaacaagcccgaaaacgg- 625
|||||||||||||||||||||||||||||||||||| | || ||||||| ||| |||||
Sbjct: 4593 gaatcttgtgatcacacttttgtttccgccgttgacacaacaaacaagcacgagaacggc 4652
Query: 626 ccttcttatattttaacaactgatttggatcctgtccagcc 666
||||||||| ||| ||||||||||||| |||||||||||||
Sbjct: 4653 ccttcttatctttcaacaactgatttgtatcctgtccagcc 4693
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8948
Number of Sequences: 1807
Number of extensions: 8948
Number of successful extensions: 136
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)