BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG06RM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig929 1148 0.0
>3x_Contig929
Length = 3696
Score = 1148 bits (579), Expect = 0.0
Identities = 639/654 (97%), Gaps = 4/654 (0%)
Strand = Plus / Minus
Query: 47 cgatgctctatcactgcttagtgatttttccagtatgcttgattttactgcgtgaatttc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3073 cgatgctctatcactgcttagtgatttttccagtatgcttgattttactgcgtgaatttc 3014
Query: 107 ttggaacacttttgtagaatcaatcgcagaatttatattataatgtagctttttcatctc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 ttggaacacttttgtagaatcaatcgcagaatttatattataatgtagctttttcatctc 2954
Query: 167 ttccaaaacaaaggggatgcggacacccaattgaaccaaacgcaacaatgcatgtgttat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 ttccaaaacaaaggggatgcggacacccaattgaaccaaacgcaacaatgcatgtgttat 2894
Query: 227 tttattgtatttaccagggtgttgtaatgggtattgagatcgattccggtagccatccaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 tttattgtatttaccagggtgttgtaatgggtattgagatcgattccggtagccatccaa 2834
Query: 287 aacgatggaagcatagtgcttgatttgatgcttttctttatcaggtctgtggatcttgtc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 aacgatggaagcatagtgcttgatttgatgcttttctttatcaggtctgtggatcttgtc 2774
Query: 347 ggccaagctgaagacctggtctatatgacttttgaatttggagtcggtagacaaggattc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 ggccaagctgaagacctggtctatatgacttttgaatttggagtcggtagacaaggattc 2714
Query: 407 ctctgatttagggagatcttcatcataaagttttaattcttgaaatcgttggaagatata 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 ctctgatttagggagatcttcatcataaagttttaattcttgaaatcgttggaagatata 2654
Query: 467 aggcatctttataccttgacttgttaactctgttaatatttgatatattggtgccttc-a 525
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 2653 aggcatctttataccttgacttgttaactctgttaatatttgatatattgttgccttcaa 2594
Query: 526 gaaaaccgaactgtgttgttcatag-aaatctctgattc-aatgccagtagtcggtcacc 583
||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 2593 gaaaaccgaactgggttgttcatagaaaatctctgattcaaatgccagtagtcggtcaca 2534
Query: 584 aaatgtattgatataaatcttaatattcctcgaatcgtgaagtgttacgcagtagttctt 643
|| ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct: 2533 aagtgtattgatataaatcttatta-tcctcggatcgtgaagtgttacgcagtagttctt 2475
Query: 644 taactttattgatagnttctacaaaagggttgtgtttcctcacattttggataa 697
||||||||||||||| |||||| ||| |||||||||||||||||| || |||||
Sbjct: 2474 taactttattgatagtttctacgaaaaggttgtgtttcctcacatctttgataa 2421
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,969
Number of Sequences: 1807
Number of extensions: 13969
Number of successful extensions: 125
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)