BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG07FM1.SCF screened BAC_end
(1049 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig893 1179 0.0
>3x_Contig893
Length = 2804
Score = 1179 bits (595), Expect = 0.0
Identities = 698/723 (96%), Gaps = 7/723 (0%)
Strand = Plus / Plus
Query: 85 tggaaagatcaaaaccgtatacagcgagaatggtaaagcataaggaaatttatgattaga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2028 tggaaagatcaaaaccgtatacagcgagaatggtaaagcataaggaaatttatgattaga 2087
Query: 145 atacacctctgcgtaatggttggcggtatcatgtatgtatgaagggtatgtatatatgta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2088 atacacctctgcgtaatggttggcggtatcatgtatgtatgaagggtatgtatatatgta 2147
Query: 205 cggctggatggatattgtgtatttatgtccctgttgcaatttttctcatttcttccatgg 264
||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 2148 cggctggatggatattgtgaatg-aggtccctgttgcaatttttctcatttcttccatgg 2206
Query: 265 tgatttgaaagcccaattcccgagacgatttccctttggattggtggcatctttggtcca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2207 tgatttgaaagcccaattcccgagacgatttccctttggattggtggcatctttggtcca 2266
Query: 325 agtcttacctgtgcgtaattcatagttctctttttctaattcgtcaaggcgtgttctgag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267 agtcttacctgtgcgtaattcatagttctctttttctaattcgtcaaggcgtgttctgag 2326
Query: 385 ctcttgattttcgtccataacttccagatttctttccattgttctattcaaatctgcttt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 ctcttgattttcgtccataacttccagatttctttccattgttctattcaaatctgcttt 2386
Query: 445 caaatctgtgggaatttcagcatctggattaggtaacgtttgtttataaagttcacgttc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2387 caaatctgtgggaatttcagcatctggattaggtaacgtttgtttataaagttcacgttc 2446
Query: 505 cagttgtttcttcaaatcttctatctctagtaataaatccttattttcgtcctgaagagt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2447 cagttgtttcttcaaatcttctatctctagtaataaatccttattttcgtcctgaagagt 2506
Query: 565 ttccatccgaagtctgttttcaattagttcattggcattagtgatatgctctctgtttaa 624
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2507 ttccatccgaagtctgttttcaattagttcattggcaatagtgatatgctctctgtttaa 2566
Query: 625 tagcgaatagtcattttctaa-tttcttcaactcttttttgaagctcgctgtttttaaat 683
||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||||
Sbjct: 2567 tagcgaatagtcattttctaattttcttcaactc-tttttgaagctgtctg-ttttaaat 2624
Query: 684 ccttttgtcctcatattgggtgttccttttccgtttccaacttgtgaatctcatcgtact 743
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2625 tctttgttcctcatatt-gttgttccttttccgtttccaacttgtgaatctcatcgtact 2683
Query: 744 ttttcccgtaacgcttc-aattgcaatggaatttattttgatttcccacaaatcagaaat 802
|||| ||||||||| | ||||||||||| | ||| |||||||||| || ||||||| ||
Sbjct: 2684 ctttcacgtaacgctccaaattgcaatgg-agttaatttgatttccaacgaatcagagat 2742
Query: 803 gaa 805
|||
Sbjct: 2743 gaa 2745
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,576
Number of Sequences: 1807
Number of extensions: 10576
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 1049
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1033
effective length of database: 10,329,639
effective search space: 10670517087
effective search space used: 10670517087
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)