BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZG08FM1.SCF screened BAC_end
         (1004 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1760                                                        1289   0.0  

>3x_Contig1760 
          Length = 27266

 Score = 1289 bits (650), Expect = 0.0
 Identities = 732/749 (97%), Gaps = 8/749 (1%)
 Strand = Plus / Plus

                                                                         
Query: 86    ctgcaaacctctcatcttcatctgcttgttcaaaaacgaagcactaccaacatctccgga 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20529 ctgcaaacctctcatcttcatctgcttgttcaaaaacgaagcactaccaacatctccgga 20588

                                                                         
Query: 146   taccatggtgtctggcttacgatcttactatagtctgatattccctaaacacctctatgc 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20589 taccatggtgtctggcttacgatcttactatagtctgatattccctaaacacctctatgc 20648

                                                                         
Query: 206   ttctaggattctagaatctttttgtcttgtatttcatctcatctcatcgcatggactgaa 265
             |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 20649 ttctaggattctagaatctttgcgtcttgtatttcatctcatctcatcgcatggactgaa 20708

                                                                         
Query: 266   gatatgtatctgcattttaaagctttgaggactttactaactccaacctttagacaattt 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20709 gatatgtatctgcattttaaagctttgaggactttactaactccaacctttagacaattt 20768

                                                                         
Query: 326   ataaaataaaaagatggataagtaacatatatagtaccctgattaaacctccaaccttgt 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20769 ataaaataaaaagatggataagtaacatatatagtaccctgattaaacctccaaccttgt 20828

                                                                         
Query: 386   ggtatctgattactgttggtacaattcataatagtttcaactgatgttcaagaacgtttt 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20829 ggtatctgattactgttggtacaattcataatagtttcaactgatgttcaagaacgtttt 20888

                                                                         
Query: 446   cagccgtcttttaagacctcaggctagattttacaatactccgattccaagagtcactta 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20889 cagccgtcttttaagacctcaggctagattttacaatactccgattccaagagtcactta 20948

                                                                         
Query: 506   taaaagattcaatggccgcacaggaaactcattcacacagctgttattcgacaaaacctc 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20949 taaaagattcaatggccgcacaggaaactcattcacacagctgttattcgacaaaacctc 21008

                                                                         
Query: 566   gaggaaatacctcgctatagtgtttggtaccggatcgttattctatttgactcatttaga 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21009 gaggaaatacctcgctatagtgtttggtaccggatcgttattctatttgactcatttaga 21068

                                                                         
Query: 626   agaggctcctgttaccgcgagaacaagg-ttatctggttgccaaggtcacttgaactcca 684
             |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 21069 agaggctcctgttaccgcgagaacaaggtttatctggttgccaaggtcacttgaactcaa 21128

                                                                         
Query: 685   gattggccaatacactttacactcggttcttagtgagactaaggngaaaatcctaccgg- 743
             |||||||||||||||||   |||||||||||||||||||||||| |||||||||||||| 
Sbjct: 21129 gattggccaatacacttacaactcggttcttagtgagactaaggggaaaatcctaccgga 21188

                                                                         
Query: 744   atcgcatcca-taacgaggaaagtgacc-agatttt-caccggattgtgga-gctgctga 799
             |||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||
Sbjct: 21189 atcgcatccattaacgaggaaagtgaccaagattttccaccggattgtggaggctgctga 21248

                                          
Query: 800   -ccccatccaagtgt-gatcaaagcctgt 826
              | | |||||||||| |||||||||||||
Sbjct: 21249 gcacgatccaagtgtggatcaaagcctgt 21277


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6662
Number of Sequences: 1807
Number of extensions: 6662
Number of successful extensions: 290
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)