BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG08RM1.SCF screened BAC_end
(1005 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig695 1267 0.0
>3x_Contig695
Length = 2059
Score = 1267 bits (639), Expect = 0.0
Identities = 650/653 (99%), Gaps = 1/653 (0%)
Strand = Plus / Minus
Query: 48 ttcttgagataaacttaggtagacctaacacattagcagcagctaaagcggaagcctcca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttcttgagataaacttaggtagacctaacacattagcagcagctaaagcggaagcctcca 605
Query: 108 aggcaagaccacgggatgcttggtaaccagctcccccaatcccgtagttatggatcacct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggcaagaccacgggatgcttggtaaccagctcccccaatcccgtagttatggatcacct 545
Query: 168 tgagtttcccttgattttttggtaaatcgaactcagagtattcaactctgacaccatctt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgagtttcccttgattttttggtaaatcgaactcagagtattcaactctgacaccatctt 485
Query: 228 ttcttcctggtctcaatgccacataagagttatagatggttggatttttcaactctggtg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttcttcctggtctcaatgccacataagagttatagatggttggatttttcaactctggtg 425
Query: 288 tatggcgtttacaaacttcaacgattttctttgtcaattcatcgtcaacggtatttgacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatggcgtttacaaacttcaacgattttctttgtcaattcatcgtcaacggtatttgacc 365
Query: 348 aatcgtttttcctcataataccaccgataatacaaccaccgtcaccacgagggaacatgt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatcgtttttcctcataataccaccgataatacaaccaccgtcaccacgagggaacatgt 305
Query: 408 tcaagaattgatcgcttgcaggattatcatcctttggcaacggttccacaacaatttgga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcaagaattgatcgcttgcaggattatcatcctttggcaacggttccacaacaatttgga 245
Query: 468 aaggtaaatcctcataaatctgaacgatttgacccttcactgggtacaccttttcaacct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaggtaaatcctcataaatctgaacgatttgacccttcactgggtacaccttttcaacct 185
Query: 528 ctgagggttcataatgcctcaagaattgacctgcatgaacacccgtagcattgattacca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctgagggttcataatgcctcaagaattgacctgcatgaacacccgtagcattgattacca 125
Query: 588 natctggcacanatccaacgatttcaggaatattctcaatggcatcaatctttgccagtt 647
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aatctggcacaaatccaacgatttcaggaatattctcaatggcatcaatctttgccagtt 65
Query: 648 gtctgagtttaccacccattttccttaatctcattgaccatccagaacttata 700
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 64 gtctgagtttaccacccatttt-cttaatctcattgaccatccagaacttata 13
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7065
Number of Sequences: 1807
Number of extensions: 7065
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 1005
length of database: 10,358,551
effective HSP length: 16
effective length of query: 989
effective length of database: 10,329,639
effective search space: 10216012971
effective search space used: 10216012971
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)