BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG09RM1.SCF screened BAC_end
(996 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig715 1229 0.0
>3x_Contig715
Length = 2727
Score = 1229 bits (620), Expect = 0.0
Identities = 753/779 (96%), Gaps = 14/779 (1%)
Strand = Plus / Plus
Query: 48 ttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtgataatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 ttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtgataatt 1453
Query: 108 tcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggtaaccct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 tcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggtaaccct 1513
Query: 168 cagttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaagctac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 cagttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaagctac 1573
Query: 228 catctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatgttcct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 catctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatgttcct 1633
Query: 288 gtatgtacaaatccgtggcaaccacaactttttatgcggtaaagaattaaagtattatga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 gtatgtacaaatccgtggcaaccacaactttttatgcggtaaagaattaaagtattatga 1693
Query: 348 tattagaaattaatgttactatgtgaaataaatgttgttagagaggagcttgctctgtga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 tattagaaattaatgttactatgtgaaataaatgttgttagagaggagcttgctctgtga 1753
Query: 408 gtgaacgataactatagatagtccgttttatagatccagtctgctccaattagatctgct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 gtgaacgataactatagatagtccgttttatagatccagtctgctccaattagatctgct 1813
Query: 468 ccttgatcctttgcgagtctgaaccatttagctgctcgtcttaaatcttntttcctattt 527
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1814 ccttgatcctttgcgagtctgaaccatttagctgctcgtcttaaatcttttttcctattt 1873
Query: 528 ggagtcgtctttgaccaaatggtaccgcataaacacatagaatcaacgtgtcccaacgat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1874 ggagtcgtctttgaccaaatggtaccgcataaacacatagaatcaacgtgtcccaacgat 1933
Query: 588 gctgcatattcc-aacatttcagaccctttcattcatgagcagtgacaccgtatccctt- 645
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1934 gctgcatattccaaacatttcagacccttccattcatgagcagtgacaccgtatcccttc 1993
Query: 646 atataagctata-cacattcgtacagagc-ggggcagctgcgtca-tctgtaga-atgga 701
|||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct: 1994 atataagctataccacattcgtacagagcgggggcagctgcgtcattctgtagagatgga 2053
Query: 702 agc-gttcacgtatctc-aatggatc-atattggattgt-atacgctgg-tttggaatcc 756
||| ||||||||||||| |||||||| ||||| | ||| ||||||||| |||| |||||
Sbjct: 2054 agcggttcacgtatctcaaatggatctatatttgcatgtaatacgctggttttgaaatcc 2113
Query: 757 ttga-accccgtgcccctttaatcaag-taaatgattcgggt-aatcgatttcggtacc 812
|||| |||| ||| ||| ||||| || ||||||||||| || ||||||||||||||||
Sbjct: 2114 ttgatacccgttgcacctctaatccagttaaatgattcgtgtaaatcgatttcggtacc 2172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5706
Number of Sequences: 1807
Number of extensions: 5706
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 996
length of database: 10,358,551
effective HSP length: 16
effective length of query: 980
effective length of database: 10,329,639
effective search space: 10123046220
effective search space used: 10123046220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)