BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG10FM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig324 652 0.0
3x_Contig735 214 3e-55
>3x_Contig324
Length = 1753
Score = 652 bits (329), Expect = 0.0
Identities = 346/352 (98%)
Strand = Plus / Minus
Query: 87 ttgtaagtgctgaagaatgttttggtgtacaaatcattgtccatgcataatttaacaatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtaagtgctgaagaatgttttggtgtacaaatcattgtccatgcataatttaacaatt 385
Query: 147 gcgtagtccaagagaccagctccatttccctcgttatactttccctgatggtttttgaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcgtagtccaagagaccagctccatttccctcgttatactttccctgatggtttttgaaa 325
Query: 207 aaagccgaaatatcatttatacntaccagcttcgagaagactgaagaagtcagaaccagg 266
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagccgaaatatcatttatacttaccagcttcgagaagactgaagaagtcagaaccagg 265
Query: 267 acatcgaacaatttttctagagaggcagatttcaatacgacattaataacagcctcatcc 326
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 acatcgaacaatttttctagagaggcagatttcaatacgacataaataacagcctcatcc 205
Query: 327 caactatcggttgtcttggagatgtttttgaaaaagtccatgttttctacaccaacgctt 386
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caactatcggatgtctaggagatgtttttgaaaaagtccatgttttctacaccaacgctt 145
Query: 387 aatctattaataacttcttgagaatcccgggaggattgaacagagaatcttt 438
|||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 144 aatctattaataacttcttgagaatcccgggaggattgaaaaaagaatcttt 93
>3x_Contig735
Length = 3283
Score = 214 bits (108), Expect = 3e-55
Identities = 193/215 (89%), Gaps = 5/215 (2%)
Strand = Plus / Minus
Query: 562 acttaagaagcattggtttgtttgactgctttgnggacaggtctctaaccacgggttcat 621
|||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 3263 acttaagaagcatttgtttgtttgactgctttgtggacagttctctaaccacgggttcat 3204
Query: 622 caattcgggcaaataccg-ttatcaacgatttatcttcagggctaatgcctaaggggtcc 680
|||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 3203 caatccggtcaa-taccggttatcaacgatttatcttcagggctaatgcctaagggtcca 3145
Query: 681 ctaaca-aaagcgttttaccggacctgctgagggtgtttgtttg-accaaagactggctg 738
|||||| | ||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct: 3144 ctaacagatagcgttttaccggacctgctgagggtgtttgtttgaacgaatgactgcctg 3085
Query: 739 tt-tttttggcccctggagcacccttgagggcagt 772
|| |||| ||| |||| |||||| ||||||||||
Sbjct: 3084 ttattttgggcacctgcagcacctatgagggcagt 3050
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6984
Number of Sequences: 1807
Number of extensions: 6984
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)