BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG10RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1790 950 0.0
>3x_Contig1790
Length = 27369
Score = 950 bits (479), Expect = 0.0
Identities = 603/636 (94%), Gaps = 8/636 (1%)
Strand = Plus / Plus
Query: 51 taagcatttctatctcgccacaccagaaatgaaaatggactaaaaagctagcattgaaaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14421 taagcatttctatctcgccacaccagaaatgaaaatggactaaaaagctagcattgaaaa 14480
Query: 111 ggtcggatactttattcatcaatgttatcattggtttagagaaaaggttgttttttttgg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14481 ggtcggatactttattcatcaatgttatcattggtttagagaaaaggttgttttttttgg 14540
Query: 171 ggtatgataagacaaagtttgcatcctacttcagtttagtctagctgttggtgcgtgccg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14541 ggtatgataagacaaagtttgcatcctacttcagtttagtctagctgttggtgcgtgccg 14600
Query: 231 ttctatgattttggcacattgaagggatgctgtcaaaaatgctgtcatttttttttgtca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14601 ttctatgattttggcacattgaagggatgctgtcaaaaatgctgtcatttttttttgtca 14660
Query: 291 cataatttgttacatcttcttttgttgctcgaaaggctggtcgattgattggtcgtaaag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14661 cataatttgttacatcttcttttgttgctcgaaaggctggtcgattgattggtcgtaaag 14720
Query: 351 tttcacggaggtgcataggagagtaacaaaaaggcaaaaaactttatcattgattttttg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14721 tttcacggaggtgcataggagagtaacaaaaaggcaaaaaactttatcattgattttttg 14780
Query: 411 acaccttttccttcgagatatctgagcaaacgatgtcgaatcattgacctgtcatatctt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14781 acaccttttccttcgagatatctgagcaaacgatgtcgaatcattgacctgtcatatctt 14840
Query: 471 tatcaaacaggcacaaaggaaag-acctttagttaattgctgctgattgnagagctgtgt 529
|||||||||| ||||||||||| ||||| || ||| ||||||||||| ||||||||||
Sbjct: 14841 tatcaaacagcaacaaaggaaagaaccttaggtaaatggctgctgattggagagctgtgt 14900
Query: 530 gttttagaattctg-ttgaatat-aaaagggagt-atatgcaatctttcctttggtt-ga 585
|||| |||||||| |||||||| |||||||||| |||||||||||||||||||||| ||
Sbjct: 14901 gtttaggaattctgtttgaatataaaaagggagtaatatgcaatctttcctttggttgga 14960
Query: 586 acacctaccc--atttnaatgcataccccttt-ccttctttgttcggaaggttccttgca 642
|||||||||| || ||||||||| ||||| ||| || ||| ||| || ||||| |
Sbjct: 14961 acacctaccccaatagaaatgcatacgcctttccctcctctgtacggcagcttcctgcaa 15020
Query: 643 tttttaaaattctattttggcattggggcatttact 678
| ||||| ||||||||||| ||||||| ||||||||
Sbjct: 15021 tctttaacattctattttgtcattgggtcatttact 15056
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,071
Number of Sequences: 1807
Number of extensions: 10071
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)