BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG11FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1300 0.0
>3x_Contig1686
Length = 15382
Score = 1300 bits (656), Expect = 0.0
Identities = 709/722 (98%), Gaps = 4/722 (0%)
Strand = Plus / Plus
Query: 86 agtccagaaatgaaggaatctgatacgcattttgctgctaccgcttaggtgaattcaagt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 agtccagaaatgaaggaatctgatacgcattttgctgctaccgcttaggtgaattcaagt 2418
Query: 146 gaacctgcatttgaacagtatagaaatatgtcagattcacccaatgaaattcttcaatat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 gaacctgcatttgaacagtatagaaatatgtcagattcacccaatgaaattcttcaatat 2478
Query: 206 agggatagtcctgagttctattattgctgcgatgctatatctcaagatttatttgaattg 265
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 agggatagtcctgagttcgaagattgctgcgatgctatatctcaagatttatttgaattg 2538
Query: 266 aacgggagcctttcaactatgaaccactttgtaacggctttggaaacgaatgtatcccac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 aacgggagcctttcaactatgaaccactttgtaacggctttggaaacgaatgtatcccac 2598
Query: 326 ggtaaatctaacactaaagttatcgacaatatcaataagaagacggttgaactaatagac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 ggtaaatctaacactaaagttatcgacaatatcaataagaagacggttgaactaatagac 2658
Query: 386 aaaagtacaaaattagtatcatcgataaacgagaatattcataaagttaatgagttagag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 aaaagtacaaaattagtatcatcgataaacgagaatattcataaagttaatgagttagag 2718
Query: 446 gagtcggctttggataagcctcatttgatcacaagggagaagttgactagggatgcgaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 gagtcggctttggataagcctcatttgatcacaagggagaagttgactagggatgcgaaa 2778
Query: 506 ttctctgtacaggaattcaagaaatatcaacaacattttcttgaagttacaaagcggata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 ttctctgtacaggaattcaagaaatatcaacaacattttcttgaagttacaaagcggata 2838
Query: 566 aatgacatggccaaagtggctttggaagatgaagaacaaaataattccttgatggatact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2839 aatgacatggccaaagtggctttggaagatgaagaacaaaataattccttgatggatact 2898
Query: 626 gntttaagagaggaagaagatgaacacgcanaaagaacacaggtggttatagagcgagga 685
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 2899 gttttaagagaggaagaagatgaacacgcaaaaagaacacaggtggttatagagcgagaa 2958
Query: 686 ccaattaataatgaggaatttgcataccagcaacatctgatcagggaacgagaccaagag 745
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2959 ccaataaataatgaggaatttgcataccagcaacatctgatcagggaacgagaccaagag 3018
Query: 746 atatc-aacatagaacaagggtattac-gaattaaatggcatattcaa-gacttaagtgg 802
||||| |||||||||||| ||||| || |||||||||||||||||||| |||||| ||||
Sbjct: 3019 atatcaaacatagaacaa-ggtataacggaattaaatggcatattcaaggacttaggtgg 3077
Query: 803 tt 804
||
Sbjct: 3078 tt 3079
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7637
Number of Sequences: 1807
Number of extensions: 7637
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)