BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZG11RM1.SCF screened BAC_end
(998 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig682 1556 0.0
>3x_Contig682
Length = 2655
Score = 1556 bits (785), Expect = 0.0
Identities = 828/838 (98%), Gaps = 5/838 (0%)
Strand = Plus / Minus
Query: 49 ttttggcccaaagagtaacacaccaaaacagaaacaactaaaccgtaaatggcaatgata 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1874 ttttggcccaaagagtaacacaccaaaacagaaacaactaaaccgtaaatggcaatgata 1815
Query: 109 ccagccataataaccggaacaatattcttgaacaatagatctggtctcaagacacatgtc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 ccagccataataaccggaacaatattcttgaacaatagatctggtctcaagacacatgtc 1755
Query: 169 gcacaaataccgacacctgacttggcagtaccgtaagcagcaccgaaagaggtgaaaata 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 gcacaaataccgacacctgacttggcagtaccgtaagcagcaccgaaagaggtgaaaata 1695
Query: 229 atggctgcagcacaaccgatggcaccaaagaatggagcatacactggacacaaatcactc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 atggctgcagcacaaccgatggcaccaaagaatggagcatacactggacacaaatcactc 1635
Query: 289 ataatgaagtctcttttttgaacaaatttgaaattggataaagcactaaaatatctgtaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 ataatgaagtctcttttttgaacaaatttgaaattggataaagcactaaaatatctgtaa 1575
Query: 349 tgtacgatctatagtgcgttgaggtctgaaaactttcttaaaggataattaaaaaaccag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 tgtacgatctatagtgcgttgaggtctgaaaactttcttaaaggataattaaaaaaccag 1515
Query: 409 tttcagaagtaactttaaaacgtttggactcttaaaatgcgatgataatattcaattgaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 tttcagaagtaactttaaaacgtttggactcttaaaatgcgatgataatattcaattgaa 1455
Query: 469 agagtaatttggaatatcggtccaaaataaaaaggaaagattttcaacgggcgataagtg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 agagtaatttggaatatcggtccaaaataaaaaggaaagattttcaacgggcgataagtg 1395
Query: 529 attgagcaataatcttcaaaacccagtctaaagctatagcgatctaacttttgtgaactc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 attgagcaataatcttcaaaacccagtctaaagctatagcgatctaacttttgtgaactc 1335
Query: 589 actctttaataaagtataatgaaacaccaattaatttattgccgtacaagctgtctggca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 actctttaataaagtataatgaaacaccaattaatttattgccgtacaagctgtctggca 1275
Query: 649 atgtggtagttaatcatttcctctgtcttataatctttgntaatccaaaattctt-aatt 707
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 1274 atgtggtagttaatcatttcctctgtcttataatctttgttaatccaaaattcttaaatt 1215
Query: 708 tcaatctcaatag-aagggcaagatanatcgtttgaaacgatattacccaccccttttct 766
||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 1214 tcaatctcaatagaaagggcaagataaatcgtttgaaacgatattaaccaccccttttct 1155
Query: 767 ctgatagaagaaatcgcacaaagaaggggacgtggtggcctgttcacatcgttgcgtacg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ctgatagaagaaatcgcacaaagaaggggacgtggtggcctgttcacatcgttgcgtacg 1095
Query: 827 gtgtattccggtaacttattcacgtgt--aagttttgttttgggt-acgtgagtcgcc 881
|||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct: 1094 gtgtattcgggtaacttattcacgtgttaatgttttgttttgggtcacgtgagtcgcc 1037
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8080
Number of Sequences: 1807
Number of extensions: 8080
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 998
length of database: 10,358,551
effective HSP length: 16
effective length of query: 982
effective length of database: 10,329,639
effective search space: 10143705498
effective search space used: 10143705498
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)