BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZG12FM1.SCF screened BAC_end
         (1012 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig934                                                         1392   0.0  

>3x_Contig934 
          Length = 4039

 Score = 1392 bits (702), Expect = 0.0
 Identities = 777/794 (97%), Gaps = 6/794 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   tgcagccttcaaaagtctccaataacagagtattcattaatcataggtatgtgcgtcttc 147
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2270 tgcagcctttaaaagtctccaataacagagtattcattaatcataggtatgtgcgtcttc 2329

                                                                        
Query: 148  tactcttgtctatcctgtagctcatccttattccttctcgagcatgtattggcgtcttat 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2330 tactcttgtctatcctgtagctcatccttattccttctcgagcatgtattggcgtcttat 2389

                                                                        
Query: 208  ttgaagaactcacgtgccgtgaatgaaattatgttaccctgaaaatagatactggagagg 267
            ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2390 ttgaagaactcacgtgccgagaaagaaattatgttaccctgaaaatagatactggagagg 2449

                                                                        
Query: 268  aaaacatcaaacccgtgcatggtgataacagatgtgccatgcaaatttcctcgagacc-t 326
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2450 aaaacatcaaacccgtgcatggtgataacagatgtgccatgcaaatttcctcgagaccct 2509

                                                                        
Query: 327  tttggggacaatagttcatgcatatacgacctgcatggacgttcttaataacaacgatta 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2510 tttggggacaatagttcatgcatatacgacctgcatggacgttcttaataacaacgatta 2569

                                                                        
Query: 387  tctgtaccattgaaatttgctcttctacattcaggtcttagtagttttcttttcggttaa 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2570 tctgtaccattgaaatttgctcttctacattcaggtcttagtagttttcttttcggttaa 2629

                                                                        
Query: 447  gagtgcaggtttactgaaaagtgaaaccatacaaagactcgtcgtcaagatgcaagtaca 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2630 gagtgcaggtttactgaaaagtgaaaccatacaaagactcgtcgtcaagatgcaagtaca 2689

                                                                        
Query: 507  gaatgttgatcgctccaagttcgctccaatgaagaatgatttgatgctcagagcagcttt 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2690 gaatgttgatcgctccaagttcgctccaatgaagaatgatttgatgctcagagcagcttt 2749

                                                                        
Query: 567  aggtgagaaggttgaaagaccaccatgttggattatgagacaggctggacgttatttacc 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2750 aggtgagaaggttgaaagaccaccatgttggattatgagacaggctggacgttatttacc 2809

                                                                        
Query: 627  agaataccatgaggtgaagaatggtcgtgactttttcgagacatgtcgtgatgcagaaat 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810 agaataccatgaggtgaagaatggtcgtgactttttcgagacatgtcgtgatgcagaaat 2869

                                                                        
Query: 687  tgcttcagaaattactattcagcccgtgagacgttacgccggtttattggatgcagctat 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2870 tgcttcagaaattactattcagcccgtgagacgttacgccggtttattggatgcagctat 2929

                                                                        
Query: 747  tatcttcagtgatattc-tgtgatccctcaggccatgggtaataaaattgagatggttga 805
            ||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||
Sbjct: 2930 tatcttcagtgatattcttgtgatccctcaggccatgggtatgaaagttgagatggttga 2989

                                                                        
Query: 806  tgggaaa-gcccttatttcccgg-accggtgagaactgaagagc-act-ccaaaggtatt 861
             |||||| ||||| ||||||||| |||| ||||||||||||||| ||| | |||||||||
Sbjct: 2990 ggggaaaggccctcatttcccggaaccgttgagaactgaagagcaactacaaaaggtatt 3049

                          
Query: 862  gaattataaggtca 875
            | ||||||||||||
Sbjct: 3050 ggattataaggtca 3063


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5813
Number of Sequences: 1807
Number of extensions: 5813
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 1012
length of database: 10,358,551
effective HSP length: 16
effective length of query: 996
effective length of database: 10,329,639
effective search space: 10288320444
effective search space used: 10288320444
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)