BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZG12RM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1502                                                        1162   0.0  

>3x_Contig1502 
          Length = 14970

 Score = 1162 bits (586), Expect = 0.0
 Identities = 681/698 (97%), Gaps = 11/698 (1%)
 Strand = Plus / Plus

                                                                        
Query: 42   ctttgagaaagcaaatttaagatcatcagaaacatctttcacccaatctgctgaattcta 101
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6048 ctttgagaaagcaaatttaagatcaccagaaacatctttcacccaatctgctgaattcta 6107

                                                                        
Query: 102  ttcggcgttcaattctaacaaagttaatagtttgggtttatttgtttcatcaaaatgcat 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6108 ttcggcgttcaattctaacaaagttaatagtttgggtttatttgtttcatcaaaatgcat 6167

                                                                        
Query: 162  tactcaaacctttacatcattcaaaagctcaaaagatatcgtacgtgaaagctccttgaa 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6168 tactcaaacctttacatcattcaaaagctcaaaagatatcgtacgtgaaagctccttgaa 6227

                                                                        
Query: 222  gtccctaatatcattattgaggtcaatatgttctgattcctgtgacgaatcatctttaca 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6228 gtccctaatatcattattgaggtcaatatgttctgattcctgtgacgaatcatctttaca 6287

                                                                        
Query: 282  aaaacttgtggatgaggcttttaagaacatgaaaaccaacctgaataccgactataagat 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6288 aaaacttgtggatgaggcttttaagaacatgaaaaccaacctgaataccgactataagat 6347

                                                                        
Query: 342  tattatatccaacttgttaataaatgtaccaactttctccaatcaagtgtcttcaaaaat 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6348 tattatatccaacttgttaataaatgtaccaactttctccaatcaagtgtcttcaaaaat 6407

                                                                        
Query: 402  cgtggatgggttgagaacttatatttcgaaggaatccaatgagacagcattgaatattat 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6408 cgtggatgggttgagaacttatatttcgaaggaatccaatgagacagcattgaatattat 6467

                                                                        
Query: 462  gttatcagcatttttccaccatttgtcctcattagaaacagcagacgaagtttcaa-tgc 520
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6468 gttatcagcatttttccaccatttgtcctcattagaaacagcagacgaagtttcaattgc 6527

                                                                        
Query: 521  tgccataaagtccggtttt-atgagaataag-tacctttgag-aagatatggtacaattc 577
            ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct: 6528 tgccataaagtccggttttaatgagaataagttacctttgagaaagatatggtacaattc 6587

                                                                        
Query: 578  ttttttatgc-acctaaacactgcaaacct-aatatcattgttcagcttgaagacg-aac 634
            ||||||| || |||||||||||||||| || ||||||||||||||||| ||||||| |||
Sbjct: 6588 ttttttaagcaacctaaacactgcaaaactaaatatcattgttcagctcgaagacgaaac 6647

                                                                        
Query: 635  acttgcatatctgaaggaggtctgttat-atccatt-aaaaatggagaagg-tcagcata 691
            ||||||||||||||||||||||||| || ||||||| |||||||||||||| ||||||||
Sbjct: 6648 acttgcatatctgaaggaggtctgtaataatccattaaaaaatggagaaggttcagcata 6707

                                                  
Query: 692  tggatgtttcgtttacattc-acattttattgacttga 728
            |||||||||||||||||||| |||| ||||||||||||
Sbjct: 6708 tggatgtttcgtttacattcaacatcttattgacttga 6745


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9008
Number of Sequences: 1807
Number of extensions: 9008
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)