BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH01FM1.SCF screened BAC_end
(1033 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1283 0.0
>3x_Contig1497
Length = 11582
Score = 1283 bits (647), Expect = 0.0
Identities = 695/709 (98%), Gaps = 2/709 (0%)
Strand = Plus / Minus
Query: 87 acatgaacaatgggacgtcattcgatgtcaagagtaaaaaaatgtcaacagcacatggtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1786 acatgaacaatgggacgtcattcgatgtcaagagtaaaaaaatgtcaacagcacatggtt 1727
Query: 147 cgcaagtcatcattcaaagtaatttgaaaccaactttgaacgatctaaatcctcctatga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1726 cgcaagtcatcattcaaagtaatttgaaaccaactttgaacgatctaaatcctcctatga 1667
Query: 207 cttcttcgcaacttcagtatagtcctacgatgtctttaaaaggtggcaagggttcgaata 266
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 cttcttcgcaacttcagtacagtcctacgatgtctttaaaaggtggcaagggttcgaata 1607
Query: 267 aggtgaatatcatggctagtccagttcagatcaagttaagtgaaccaccggctttacgtg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 aggtgaatatcatggctagtccagttcagatcaagttaagtgaaccaccggctttacgtg 1547
Query: 327 agactaaagccgttaagacatctaaatcaaagaaaaatggtgctggaggatctggttcta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 agactaaagccgttaagacatctaaatcaaagaaaaatggtgctggaggatctggttcta 1487
Query: 387 acggtaagaatgaaatggtattcgtgaattactctgtgcaagacactatagaaacgcaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 acggtaagaatgaaatggtattcgtgaattactctgtgcaagacactatagaaacgcaaa 1427
Query: 447 agaagaagaagaaacaatctaagagggatcgaatgctgagaatttttaccgganataata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1426 agaagaagaagaaacaatctaagagggatcgaatgctgagaatttttaccggaaataata 1367
Query: 507 acagtggtaataatgacggtaggtcagcttccagtcccggttcgagttcgacaatcatag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 acagtggtaataatgacggtaggtcagcttccagtcccggttcgagttcgacaatcatag 1307
Query: 567 ctagtanaactttgactgttcagtctgcaccggcatctgccgccaagagaacttatgggt 626
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 ctagtaaaactttgactgttcagtctgcaccggcatctgccgccaagagaacttatgggt 1247
Query: 627 ctttcttg-aatgccacaggtataacccaaagcatgccgttgttgaatctgagcaaatgg 685
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1246 ctttcttgaaatgccacaggtataacccaagcaatgccgttgttgaatctgagcaaatgg 1187
Query: 686 atgaaatagttccaagatcttgaacttattccaaatggacaaaaacttgccttgacaaga 745
||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 1186 atgaaatagttccaagatc-tgaacctattccaaatggacaaaaacctgctttgacaaga 1128
Query: 746 tctgctagctctaacgtggccttggtgaagaacaatggtagatgctctt 794
|||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 1127 tctgctagctctaacgtggctttggtgagaaacaatggtagatgctctt 1079
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7696
Number of Sequences: 1807
Number of extensions: 7696
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 1033
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1017
effective length of database: 10,329,639
effective search space: 10505242863
effective search space used: 10505242863
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)