BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH01RM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig662 1039 0.0
>3x_Contig662
Length = 2162
Score = 1039 bits (524), Expect = 0.0
Identities = 625/655 (95%), Gaps = 3/655 (0%)
Strand = Plus / Plus
Query: 43 cttctcatggctcctgaacaacttctaaagatggcatcgcaggtcgaaccggtaggccca 102
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 cttctcatg-ctcctgaacaacttctaaagatggcatcgcaggtcgaaccggtaggccca 1070
Query: 103 actcttgtaaggtcgcgacaattttgttttgcacagcaggcttgtaagttgatatctttg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 actcttgtaaggtcgcgacaattttgttttgcacagcaggcttgtaagttgatatctttg 1130
Query: 163 aggacctgaggtatactccgggagcaagtttttctccatgggcaatgacgccgagtgctt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 aggacctgaggtatactccgggagcaagtttttctccatgggcaatgacgccgagtgctt 1190
Query: 223 tcctctcttctagggtgaatttttctagtaaatgctctgcatactcgctatcctgctttc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 tcctctcttctagggtgaatttttctagtaaatgctctgcatactcgctatcctgctttc 1250
Query: 283 ttctaagggcattttgtaattcgatcttttgctttttattgagccgttggccttcagtct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 ttctaagggcattttgtaattcgatcttttgctttttattgagccgttggccttcagtct 1310
Query: 343 taacttctatgttctcactaggttgctgatccttagaagtgatttgatcggattgtggtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 taacttctatgttctcactaggttgctgatccttagaagtgatttgatcggattgtggtt 1370
Query: 403 tctgttgtttctgctgtttctgctgttgctgttgctgctgttgctgntgttgctgttgtt 462
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1371 tctgttgtttctgctgtttctgctgttgctgttgctgctgttgctgttgttgctgttgtt 1430
Query: 463 gttgttggataattgtcccctgtttaaactgttgctgatgttggatttggtgcctttgtt 522
||||||| |||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct: 1431 gttgttgtataatttgtccctgtttaaactgttgctgatgttggatttgttgtctctgtt 1490
Query: 523 gagcaaattgctgctgctgtttcattcacggattctctggaatgttagaatccgggtttc 582
||||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||||
Sbjct: 1491 gagcaaattgctgctgctgtttcatccacggattctctggagtgttagaatcgggttttc 1550
Query: 583 ttttcctattcttaacatttaataaggttggattttagctgtggaatttcttggaaatgt 642
|||||||||||||| ||||||||||| ||| | | |||||||| ||| ||| || ||||
Sbjct: 1551 ttttcctattcttatcatttaataagtttgca-tatagctgtgacattcctt-gagatgt 1608
Query: 643 gaggaacttggaaaagggtttatttgaatgtggatggtcaaaaaattttaacaaa 697
|||||||| |||| |||||||| ||||||||||||||||| || || |||||||
Sbjct: 1609 gaggaactgtgaaatgggtttatctgaatgtggatggtcaagaagttgtaacaaa 1663
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,415
Number of Sequences: 1807
Number of extensions: 11415
Number of successful extensions: 734
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)