BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH02FM1.SCF screened BAC_end
(1015 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1087 1067 0.0
>3x_Contig1087
Length = 4184
Score = 1067 bits (538), Expect = 0.0
Identities = 603/622 (96%), Gaps = 2/622 (0%)
Strand = Plus / Minus
Query: 86 agggtctttaaactgcctcaacgaaaataaaatcctacctaacatttcatttgtgaattt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 agggtctttaaactgcctcaacgaaaataaaatcctacctaacatttcatttgtgaattt 4079
Query: 146 cgtatttggttccgtcaaaggatattcattgaacattgacatgattttgaagacagtttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 cgtatttggttccgtcaaaggatattcattgaacattgacatgattttgaagacagtttc 4019
Query: 206 tgtatccccaattctttgaaaataattgagtatttcaacaaacgactttcgaatgaaggg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 tgtatccccaattctttgaaaataattgagtatttcaacaaacgactttcgaatgaaggg 3959
Query: 266 tacgggagtatctttgggtaaagcatccatcatgctatgcaccgtttccaagaacatgtc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3958 tacgggagtatctttgggtaaagcatccatcatgctatgcaccgtttccaagaacatgtc 3899
Query: 326 aatataattcgtacatctagcaaaatgctgtaaagtgtgcataaattcaataaaatataa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3898 aatataattcgtacatctagcaaaatgctgtaaagtgtgcataaattcaataaaatataa 3839
Query: 386 tttccgtacatcgtaaggaatgcgttcgtttctcaattccacattttccagtctagtagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3838 tttccgtacatcgtaaggaatgcgttcgtttctcaattccacattttccagtctagtagt 3779
Query: 446 taaaacatccaaatattccttgatgtgtaccatgtcttttttcgttatgagcaggttgac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3778 taaaacatccaaatattccttgatgtgtaccatgtcttttttcgttatgagcaggttgac 3719
Query: 506 gattcgtctcattggtcgggaagggtgcatgacactaaatttttcatcgaaaatgtgacg 565
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3718 gattcgtctcattggtcggaaagggtgcatgacactaaatttttcatcgaaaatgtgacg 3659
Query: 566 tttttcaggatcctc-attaagtgaaggaagcttgccactctatatttcatcttcgaacc 624
||||||||||||||| || |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 3658 tttttcaggatcctcaataaagtgaaggaagctagccactctatattccatctccgaacc 3599
Query: 625 ttttcacatttcttctttgtgtcaatcctggcttatgacctgatattaatccattgtttt 684
||| ||| ||||| |||||||| ||||| | |||||||||||||||| |||||||||
Sbjct: 3598 tttcaaca-ttctttcttgtgtcagtcctgcataatgacctgatattaatacattgtttt 3540
Query: 685 tcatgaagaaaagatagtgctt 706
|||| |||||||||||||||
Sbjct: 3539 cgatgaggaaaagatagtgctt 3518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,369
Number of Sequences: 1807
Number of extensions: 21369
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 1015
length of database: 10,358,551
effective HSP length: 16
effective length of query: 999
effective length of database: 10,329,639
effective search space: 10319309361
effective search space used: 10319309361
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)