BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH02RM1.SCF screened BAC_end
(1002 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1258 1279 0.0
>3x_Contig1258
Length = 6899
Score = 1279 bits (645), Expect = 0.0
Identities = 777/803 (96%), Gaps = 14/803 (1%)
Strand = Plus / Minus
Query: 40 aagctttanctcttcggctgccacatttttgaatagcaagaaatcgcaaaacgcgaatca 99
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5462 aagctttagctcttcggctgccacatttttgaatagcaagaaatcgcaaaacgcgaatca 5403
Query: 100 taataaattgaaaagcgcaactgaagtatcagatatattggaatctgaatttgctactca 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5402 taataaattgaaaagcgcaactgaagtatcagatatattggaatctgaatttgctactca 5343
Query: 160 aaaatcatggaacgggagcgttgcaaaaactacaactcaaatgtctggtattactgctct 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5342 aaaatcatggaacgggagcgttgcaaaaactacaactcaaatgtctggtattactgctct 5283
Query: 220 tatgaatgaaactaaaaaactggaaaatactattaccccaccttggtcatcaaggcgatt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5282 tatgaatgaaactaaaaaactggaaaatactattaccccaccttggtcatcaaggcgatt 5223
Query: 280 aattcatcaattatacgaacagagtgttgcttcaggaaatatcctactaacgatggcaat 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5222 aattcatcaattatacgaacagagtgttgcttcaggaaatatcctactaacgatggcaat 5163
Query: 340 tttgttattatttcaagatatgtttcaacttgttgatacagagacagttaagaattctat 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5162 tttgttattatttcaagatatgtttcaacttgttgatacagagacagttaagaattctat 5103
Query: 400 agcggaatttaccgaattattgcaccggtacgagctatttgagattgcagcggagttgat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5102 agcggaatttaccgaattattgcaccggtacgagctatttgagattgcagcggagttgat 5043
Query: 460 gaaaaactgtccttacgaggatatttctagttcaagtgnctggc-tttcctccattcagt 518
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 5042 gaaaaactgtccttacgaggatatttctagttcaagtg-ctggcttttcctccattcagt 4984
Query: 519 tattctgtgataaatgcaatanacctttagttaacgaatctttccaggagaaaataatca 578
||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 4983 tattctgtgataaatgcaataaacctttagttaacgaatcttccaaggagaaaataatca 4924
Query: 579 aagaaagactttgaagaaattcaagtgcttatgtcca-gtttggatactggtactgcgat 637
||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 4923 aagaaagacttgaaggaaattcaagtgc-tatgtccaggtttggatactggtactgcgat 4865
Query: 638 tcatgttct-agcgcaatactctctgttgcttctgcaat-aaccaatgaagagcttggct 695
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4864 tcatgttctaagcgcaatactctctgttgcttctgcaataaaccaatgaagagcttggct 4805
Query: 696 a-ttctatgcttaactgt-ggcatgagggtcacttcgagtgtttg-aaaaatggtttttt 752
| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4804 atttctatgcttaactgtgggcatgagggtcacttcgagtgtttgaaaaaatggtttttt 4745
Query: 753 gacg-aaacatgtatgattgcccatt-ggatgccca-caatc-tattttgaagtcaattt 808
|||| ||||||| ||| |||||||| ||||||||| ||||| |||| ||||||||||||
Sbjct: 4744 gacgaaaacatggatgtatgcccattgggatgcccagcaatcttattctgaagtcaattt 4685
Query: 809 cctgttaa-tccgatcttttcta 830
|||||||| || |||||||||||
Sbjct: 4684 cctgttaattcggatcttttcta 4662
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9216
Number of Sequences: 1807
Number of extensions: 9216
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 1002
length of database: 10,358,551
effective HSP length: 16
effective length of query: 986
effective length of database: 10,329,639
effective search space: 10185024054
effective search space used: 10185024054
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)