BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH04FM1.SCF screened BAC_end
(1006 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1069 926 0.0
>3x_Contig1069
Length = 3994
Score = 926 bits (467), Expect = 0.0
Identities = 579/607 (95%), Gaps = 7/607 (1%)
Strand = Plus / Minus
Query: 89 catctggaatatatttggaagaacttaatcatctttctatgagtaagaagttggaaagat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 catctggaatatatttggaagaacttaatcatctttctatgagtaagaagttggaaagat 630
Query: 149 gagtaactgttttcttatgttcatgataaagagcggacagcaggacaagttaagattttc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gagtaactgttttcttatgttcatgataaagagcggacagcaggacaagttaagattttc 570
Query: 209 tttatatgggtgctgaactaatatcaagagaatacactacttagtcttatttcacagtac 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttatatgggtgctgaactaatatcaagagaatacactacttagtcttatttcacagtac 510
Query: 269 tgtttaataccggtttattattgagctgttcactgttgctcatttccccttatactaact 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgtttaataccggtttattattgagctgttcactgttgctcatttccccttatactaact 450
Query: 329 ggaagcagagataaaagaaggtcaaagaaagtatgactgtgagtagagactcgttggttt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggaagcagagataaaagaaggtcaaagaaagtatgactgtgagtagagactcgttggttt 390
Query: 389 tgatccatccagctgtaacgcaacagccggagctattggaaactattgagaagggttcaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgatccatccagctgtaacgcaacagccggagctattggaaactattgagaagggttcaa 330
Query: 449 tcttgtctgagactactatagttgctcagtatttgattaacaaaactaatgatggtacta 508
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 329 tcttgtctgagactactatagttgctcagtatttgattaacaaactaaatgatggtacta 270
Query: 509 tttcttccgatgatgagaagtacgatgtaatattctttgtgactcctggaaagccagaag 568
||||| | ||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 269 tttctccagatgatgagaagtacgatgtaatatactatgtgactcctgaaaagccagaag 210
Query: 569 ccttccagtttcccccaaaactaattactggggctttacaagaaggttgaaacccttagg 628
|| | |||||||| |||||||||| ||| | |||| ||||| | ||||||||| | |||
Sbjct: 209 ccattcagtttccaccaaaactaa-tacctgtgcttcacaag-acgttgaaaccttcagg 152
Query: 629 tagaccattttggattaagtggataccttggaaagtggatggctttaatttaatgggttt 688
||||| | | |||||||||| |||| ||| |||||||||| ||||||| |||||||||||
Sbjct: 151 tagacta-tatggattaagt-gata-ctttgaaagtggat-gctttaa-ttaatgggttt 97
Query: 689 gaaattg 695
|||||||
Sbjct: 96 gaaattg 90
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,265
Number of Sequences: 1807
Number of extensions: 10265
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)