BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH05FM1.SCF screened BAC_end
(1064 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1404 0.0
>3x_Contig1804
Length = 51183
Score = 1404 bits (708), Expect = 0.0
Identities = 756/768 (98%), Gaps = 3/768 (0%)
Strand = Plus / Minus
Query: 86 tgaaggaggattcgaaaacaaatgggaccatggcgcaaaggttaaat-aacttggatgaa 144
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 32710 tgaaggaggattcgaaaacaaatgggaccatggcgcaaaggttaaatgaacttggatgaa 32651
Query: 145 ggaaacgatgctccacaggctcagtggaaaaattatttactcaaaccaaagcaaaagagt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32650 ggaaacgatgctccacaggctcagtggaaaaattatttactcaaaccaaagcaaaagagt 32591
Query: 205 gaccaatctgcgaaagatgtattggatttaattgtgacagcatcattaagtgatctttct 264
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 32590 gaccaatctgcgaaagatgtatcggatttaattgtgacagcatcattaagtgatctttct 32531
Query: 265 ttaattcctgcagatacattcaagaagaaggaaaggaacgatctcagtagtctaagtcat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32530 ttaattcctgcagatacattcaagaagaaggaaaggaacgatctcagtagtctaagtcat 32471
Query: 325 gaaactgatcctgcacgagaagcaaaatcagtctttaaaaatgttctgaaaaaccaaaga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32470 gaaactgatcctgcacgagaagcaaaatcagtctttaaaaatgttctgaaaaaccaaaga 32411
Query: 385 tccaattatttcagggacaatgataccctaaccactcagaatactaagaattcaaatggt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32410 tccaattatttcagggacaatgataccctaaccactcagaatactaagaattcaaatggt 32351
Query: 445 gccaaccagccatatcagacaaggaactacataaattcagacttcgagtccggatcccgt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32350 gccaaccagccatatcagacaaggaactacataaattcagacttcgagtccggatcccgt 32291
Query: 505 cccgtgtctggatcagaagattttgaatcgggttctgattcaagttcggattctctatcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32290 cccgtgtctggatcagaagattttgaatcgggttctgattcaagttcggattctctatcc 32231
Query: 565 gaactgaacccatcgaatctcaactcacctagtcctaagcctagaattgtaacgaacacc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32230 gaactgaacccatcgaatctcaactcacctagtcctaagcctagaattgtaacgaacacc 32171
Query: 625 agaaggttacctctgataactccagaagatgctgggttagtatttgatcatgaaactgga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32170 agaaggttacctctgataactccagaagatgctgggttagtatttgatcatgaaactgga 32111
Query: 685 ctatgggataaacaacgtatgatagccgctgctgattccaatatatctggaaacagtacc 744
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 32110 ctatgggataaacaacgtatgatagccgctgctgattccaatatatcggaaaacagtacc 32051
Query: 745 ggctcatttgttttggaggaagattcgacaacatctaattcgaattcgatttctcattct 804
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 32050 ggctcatttgttatggaggaagattcgacaacaactaattcgaattcgaattctcattct 31991
Query: 805 agtctaaaacccattttcagattcattttcaacgagaccttaccttgg 852
||||||||||||| ||||||||||| || ||||||||| ||||||||
Sbjct: 31990 agtctaaaaccca-tttcagattca-ttcaaacgagaccctaccttgg 31945
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7701
Number of Sequences: 1807
Number of extensions: 7701
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1064
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1048
effective length of database: 10,329,639
effective search space: 10825461672
effective search space used: 10825461672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)