BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH05RM1.SCF screened BAC_end
(1000 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 1566 0.0
>3x_Contig1764
Length = 22510
Score = 1566 bits (790), Expect = 0.0
Identities = 848/860 (98%), Gaps = 6/860 (0%)
Strand = Plus / Minus
Query: 43 cttccactgtcagatgagcaatgactgtcgtagcgatggcctcgataccttcttgcaaga 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19429 cttccactgtcagatgagcaatgactgtcgtagcgatggcctcgataccttcttgcaaga 19370
Query: 103 tggaaagtttctgtcttctgacagttttaactttagtaccaatgaattctaaggcttgtt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19369 tggaaagtttctgtcttctgacagttttaactttagtaccaatgaattctaaggcttgtt 19310
Query: 163 gttgcgtgtatatttttagttcggcagcttcttcgagattcaccgcgaagatatcttgat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19309 gttgcgtgtatatttttagttcggcagcttcttcgagattcaccgcgaagatatcttgat 19250
Query: 223 aactgctatcattaccacaaactaactgcatgatttctaaatcagatacaacaccacaag 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19249 aactgctatcattaccacaaactaactgcatgatttctaaatcagatacaacaccacaag 19190
Query: 283 ccttcaaaacaactacaattggaacctcttctgcgatagagttatgttttaagtatattt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19189 ccttcaaaacaactacaattggaacctcttctgcgatagagttatgttttaagtatattt 19130
Query: 343 tatcattcttggtgactacgtaagtcttagattttctttcgtgggtggaagatgtaacag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19129 tatcattcttggtgactacgtaagtcttagattttctttcgtgggtggaagatgtaacag 19070
Query: 403 aagcttgtacgatgtttttcttctcatctgcttccacaatgatacgattcttagataatt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19069 aagcttgtacgatgtttttcttctcatctgcttccacaatgatacgattcttagataatt 19010
Query: 463 gttcttgaactaagatgactttttcagtaccattaacaatgaaatatccacctggatcta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19009 gttcttgaactaagatgactttttcagtaccattaacaatgaaatatccacctggatcta 18950
Query: 523 agggacattcatttaatttggccatatcattttctgctgcaccatctaatatacatttgt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18949 agggacattcatttaatttggccatatcattttctgctgcaccatctaatatacatttgt 18890
Query: 583 ttgatctcaacattatgggcattctaccgatcttcacatctctatgcaacacaattgatc 642
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 18889 ttgatctcaacattatgggcattctaccgatctccacatctctatgcaacacaattgatc 18830
Query: 643 ttcctctggtgtattcaatatcaacaaagataggagtactgtatgtcatgtctcgtaatc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18829 ttcctctggtgtattcaatatcaacaaagataggagtactgtatgtcatgtctcgtaatc 18770
Query: 703 tacattcatgtggtggggtcataatagctttgttgccgttatgtttgtatcctactccta 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 18769 tacattcatgtggtggggtcataatagctttgttgccgttatgtttgtatcctactctaa 18710
Query: 763 tgtcnatgtacttcaagt-anactctggatcgacatcagatattataacctcattagctt 821
|||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct: 18709 tgtcaatgtacttcaagtaaaactctggatcgacatcagataatataacctcattagctt 18650
Query: 822 tgatgatcttcttc-aatcaacatcc-caaagtaatt-aaagagtcc-aatgctgcttta 877
|||||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 18649 tgatgatcttcttcaaatcaacatccacaaagtaattaaaagagtccaaatgctgcttta 18590
Query: 878 ctaa-cctttcacctttaaa 896
|||| |||||||||||||||
Sbjct: 18589 ctaaccctttcacctttaaa 18570
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7643
Number of Sequences: 1807
Number of extensions: 7643
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)