BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH06RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 900 0.0
>3x_Contig1281
Length = 7825
Score = 900 bits (454), Expect = 0.0
Identities = 554/577 (96%), Gaps = 9/577 (1%)
Strand = Plus / Minus
Query: 48 acatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaacata 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 acatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaacata 1407
Query: 108 ttttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcgaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 ttttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcgaga 1347
Query: 168 gataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggccaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 gataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggccaa 1287
Query: 228 ttcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatctaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 ttcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatctaac 1227
Query: 288 aatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctctgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 aatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctctgg 1167
Query: 348 aatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgatct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 aatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgatct 1107
Query: 408 tgaatttcactcgtaaaactatctgtggcattttnngcataacanattg-aactggaatc 466
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 1106 tgaatttcactcgtaaaactatctgtggcattttgc-aataacaaattgaaactggaatc 1048
Query: 467 aacaaaatctgccaaaaactcttntatgctaggtaatgttgtcagaagaacatgtaaata 526
||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||
Sbjct: 1047 aacaaaatctgccaaaaactcttttatgcta-gtaatgttgtcagaag-acatgtaaata 990
Query: 527 g-attacctttagtact-taaaagctgctactgagtcctccaat-acatcgagtct-ata 582
| |||||||| |||||| |||||||||||||||||||| |||| ||||||||||| |||
Sbjct: 989 gaattaccttcagtactaaaaaagctgctactgagtccttcaataacatcgagtctcata 930
Query: 583 gnggagggtttattcc-ttttttttttgagcctaact 618
| | || |||||||| ||||||| ||||| ||||||
Sbjct: 929 gtgatggttttattccatttttttcttgagtctaact 893
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,398
Number of Sequences: 1807
Number of extensions: 10398
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)