BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZH07FM1.SCF screened BAC_end
         (1031 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig548                                                          735   0.0  

>3x_Contig548 
          Length = 2225

 Score =  735 bits (371), Expect = 0.0
 Identities = 494/526 (93%), Gaps = 8/526 (1%)
 Strand = Plus / Plus

                                                                       
Query: 232 tgatctaccggttcctattttggaatctgaagataaatgggacagaaaaattgactatgc 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgatctaccggttcctattttggaatctgaagataaatgggacagaaaaattgactatgc 450

                                                                       
Query: 292 tccatctttaaacgaacagtacgatgttaggtggatgattgcaggtcgtgaatctgccga 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tccatctttaaacgaacagtacgatgttaggtggatgattgcaggtcgtgaatctgccga 510

                                                                       
Query: 352 tggtttcgaatatggtcttttcgataaaggttccttccaagaaaccttgtctggttgggc 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tggtttcgaatatggtcttttcgataaaggttccttccaagaaaccttgtctggttgggc 570

                                                                       
Query: 412 caagggtgttgttacaggtagagcccgtttaggtggtattccattaggtgttattgccgt 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caagggtgttgttacaggtagagcccgtttaggtggtattccattaggtgttattgccgt 630

                                                                       
Query: 472 tgaaacaagaattgtcgaaaatttgattcctgctgatcctgctaatcctgattctaccga 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgaaacaagaattgtcgaaaatttgattcctgctgatcctgctaatcctgattctaccga 690

                                                                       
Query: 532 aatgttgattcaagaaagccgccaagtttggtatccaaattccgggttcaagacagcccc 591
           ||||||||||||||||  | |||||||||||||||||||||||| ||||||||||| |||
Sbjct: 691 aatgttgattcaagaagccggccaagtttggtatccaaattccgcgttcaagacag-ccc 749

                                                                       
Query: 592 agcttatc-atgacttcaatcatggggaacaattgccatttatgatccttaccacctggg 650
           ||  |||| |||||||||||||||| |||||||||||||| ||||||||  ||| || ||
Sbjct: 750 aggctatcaatgacttcaatcatggtgaacaattgccattaatgatcctagccaact-gg 808

                                                                       
Query: 651 agaggtttttttggtgggacaacttgattttgtccaacgaaatttttgaagtatgggttt 710
           |||||||| | |||| ||||||| ||| | ||| ||||| || |||||||||||||  ||
Sbjct: 809 agaggtttctctggt-ggacaacgtga-tatgtacaacg-aagttttgaagtatgg--tt 863

                                                         
Query: 711 tttttatcgtggatgccttggttggttaccaacagcctttaattac 756
            ||| ||||| ||||| ||||||| |||| |||||||| |||||||
Sbjct: 864 ctttcatcgttgatgcattggttgattacaaacagcctataattac 909


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,451
Number of Sequences: 1807
Number of extensions: 13451
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 1031
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1015
effective length of database: 10,329,639
effective search space: 10484583585
effective search space used: 10484583585
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)