BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZH07RM1.SCF screened BAC_end
         (1048 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1499                                                         803   0.0  

>3x_Contig1499 
          Length = 7822

 Score =  803 bits (405), Expect = 0.0
 Identities = 444/452 (98%), Gaps = 4/452 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   cagtaagcacttttttagcttagcatttaaaatgccaagcgctttcttaaattattgtgt 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 cagtaagcacttttttagcttagcatttaaaatgccaagcgctttcttaaattattgtgt 2763

                                                                        
Query: 107  tttgattttcgatatatatgaatcctttaaacattgaacttcgaacttttcgaaaacgaa 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 tttgattttcgatatatatgaatcctttaaacattgaacttcgaacttttcgaaaacgaa 2703

                                                                        
Query: 167  agctaaaagttgcatgatagagggaaagagagttgagctgagttgagagatatctacact 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 agctaaaagttgcatgatagagggaaagagagttgagctgagttgagagatatctacact 2643

                                                                        
Query: 227  tcacggctttgaaggttgaagttattctatcgaccaatctagtggtaaatccgataaaat 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 tcacggctttgaaggttgaagttattctatcgaccaatctagtggtaaatccgataaaat 2583

                                                                        
Query: 287  cttttatcatcatgaaaccgtttttgacaggacactcagacctagtgcacgatattagtt 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2582 cttttatcatcatgaaaccgtttttgacaggacactcagacctagtgcacgatattagtt 2523

                                                                        
Query: 347  atgacttttacggtcgtcgagtcgcaacatgttccagcgaccaacatatcaagggtgttc 406
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2522 atgacttttacggtcgtcgagtcgcaacatgttccagcgaccaacatatcaa-ggtgttc 2464

                                                                        
Query: 407  aagctagacanggaaacgaatgagtggggaattgagcgaaagttgggaaggctcacgata 466
            |||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 2463 aagctagacaaggaaacgaatgagt-gggaattgagcgaaagtt-ggaaggctcacgata 2406

                                            
Query: 467  gcaggaatgtgtctctttgtttgggccgcacc 498
            |||| | |||||||| ||| ||||||||||||
Sbjct: 2405 gcagtattgtgtctc-ttgattgggccgcacc 2375


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7119
Number of Sequences: 1807
Number of extensions: 7119
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 1048
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1032
effective length of database: 10,329,639
effective search space: 10660187448
effective search space used: 10660187448
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)