BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH08RM1.SCF screened BAC_end
(1018 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1489 0.0
>3x_Contig1775
Length = 26320
Score = 1489 bits (751), Expect = 0.0
Identities = 840/858 (97%), Gaps = 9/858 (1%)
Strand = Plus / Minus
Query: 48 ctagatttgtatggtcgccaataacaatctaatagatccggagaacaaatctcttgtcaa 107
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3301 ctagatttgtatg-tcgccaataacaatctaatagatccggagaacaaatctcttgtcaa 3243
Query: 108 atatgatgatacgctttatcaaatgtctaacagagctccccaaaatggtggaatacagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3242 atatgatgatacgctttatcaaatgtctaacagagctccccaaaatggtggaatacagaa 3183
Query: 168 aattgcaagagggctaatagtttcgcccactttcctctcaaaaaacttcaacacctacca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3182 aattgcaagagggctaatagtttcgcccactttcctctcaaaaaacttcaacacctacca 3123
Query: 228 ccaaatctacaagcctaatggtgaaccgcttctcaaagtaccagagaagggacccatccc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3122 ccaaatctacaagcctaatggtgaaccgcttctcaaagtaccagagaagggacccatccc 3063
Query: 288 aactcttgaaattgtcacggagaagaaaattggtaggaaggtcatcacaagagtcactaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 aactcttgaaattgtcacggagaagaaaattggtaggaaggtcatcacaagagtcactaa 3003
Query: 348 ttttgaaaagtttaaaattgactctgaagaattagctgctgcattaagaaagaagtgcag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3002 ttttgaaaagtttaaaattgactctgaagaattagctgctgcattaagaaagaagtgcag 2943
Query: 408 cggatccaccaccattggtgagtctaaatcgacgaaaactgctgaagtccaggttcaggg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2942 cggatccaccaccattggtgagtctaaatcgacgaaaactgctgaagtccaggttcaggg 2883
Query: 468 tccacacggttcaatcgtaatctctattttgaatgactacggtattcctactaaatggat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 tccacacggttcaatcgtaatctctattttgaatgactacggtattcctactaaatggat 2823
Query: 528 ttcgtttgaaaataaagtcaaaccaaaacaaaagaagaagctgtaaggtacacttatgca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 ttcgtttgaaaataaagtcaaaccaaaacaaaagaagaagctgtaaggtacacttatgca 2763
Query: 588 gataggcattatgtgaaactgctctttgtggtctttccagggccctgtatatcatagata 647
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2762 gataggcattatgtgaaactgctctttgtggtctttccagggccttgtatatcatagata 2703
Query: 648 actcatcttcttcctcgtcttattcacctacataaacagtataccaattacatatttacc 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2702 actcatcttcttcctcgtcttattcacctacataaacagtataccaattacata-ttacc 2644
Query: 708 cggatttgtcgatgtatcaaaa-tttttcagctttagtataatgattagttgggattaaa 766
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 2643 cggatttgtcgatgtatcaaaattttttcagctttagtataatgattagttggattaaaa 2584
Query: 767 tcttggaaagcgtttac-agaacgatgagaaccacgagttgacgttatattaccctttgg 825
|||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2583 tcttgg-aagcgttaacaagaacgatgagaacaacgagttgacgttatattaccctttgg 2525
Query: 826 agagg-tacaattcattttcaacta-ttcacgt-aaaacttcaaagacttgngtctctga 882
||||| |||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct: 2524 agaggatacaatcaattttcaactatttcacgtaaaaacttcaaagacttgtgtctctga 2465
Query: 883 ataacc-gagattttttc 899
|||||| |||||||||||
Sbjct: 2464 ataacctgagattttttc 2447
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8151
Number of Sequences: 1807
Number of extensions: 8151
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 1018
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1002
effective length of database: 10,329,639
effective search space: 10350298278
effective search space used: 10350298278
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)