BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH09FM1.SCF screened BAC_end
(1047 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1598 753 0.0
3x_Contig902 541 e-154
>3x_Contig1598
Length = 11902
Score = 753 bits (380), Expect = 0.0
Identities = 390/392 (99%), Gaps = 1/392 (0%)
Strand = Plus / Minus
Query: 86 ctaaagctatgtttcaaccaggtgaccgtgttgaagtgttgaccggggaacaacgtggat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctaaagctatgtttcaaccaggtgaccgtgttgaagtgttgaccggggaacaacgtggat 357
Query: 146 ctagaggtgtggtgactagaagttctaaagacgtcatcagcgttaaactatcgggctttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctagaggtgtggtgactagaagttctaaagacgtcatcagcgttaaactatcgggctttt 297
Query: 206 cagataaatcattagagttct-aattgcatctctaagaaaaattttcgaacttggtgacc 264
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cagataaatcattagagttcccaattgcatctctaagaaaaattttcgaacttggtgacc 237
Query: 265 atgtcacagtaatagctggtgaacatgaaggtaacgctggtttggttcttttggtgcaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atgtcacagtaatagctggtgaacatgaaggtaacgctggtttggttcttttggtgcaga 177
Query: 325 acggtcaagtcacatttgtttctgaccaaactagagaaaatttgacaatctctgcgaata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 acggtcaagtcacatttgtttctgaccaaactagagaaaatttgacaatctctgcgaata 117
Query: 385 acttgagtaaatctatggattctactccgacatcaagcgagtacgctctacatgacattg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 acttgagtaaatctatggattctactccgacatcaagcgagtacgctctacatgacattg 57
Query: 445 ttgagttaagtgccaaaaacgtggcatgtgtg 476
||||||||||||||||||||||||||||||||
Sbjct: 56 ttgagttaagtgccaaaaacgtggcatgtgtg 25
>3x_Contig902
Length = 2936
Score = 541 bits (273), Expect = e-154
Identities = 375/403 (93%), Gaps = 5/403 (1%)
Strand = Plus / Plus
Query: 488 acatgatattttcaagattattgacgactccggtaaagtggctactgttactaaaggctc 547
|||| ||||||| || |||||| || || || |||| ||| || ||||| |||||||||
Sbjct: 222 acattatattttgaatattatttactacgcctttaaattgggtagtgttagtaaaggctc 281
Query: 548 aattcttgccaagatcaatgtagcaagagcgaaagtagctgctgtcgatggtaatggtag 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aattcttgccaagatcaatgtagcaagagcgaaagtagctgctgtcgatggtaatggtag 341
Query: 608 agaaataaaaattggcgatgtagtaagagaaaagatcggttcccgtagagagggaccagt 667
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 342 agaaatgaaaattggcgatgtagtaagagaaaagatc-gttcccgtagagagggacaagt 400
Query: 668 actctacgttcaaaaccaacatattttcattagatcgaaaacaataacggnaaatgccgg 727
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 401 actctacgttcaaaaccaacatattttcattagatcgaaaacaataacggaaaatgccgg 460
Query: 728 tgttttcgttgttaatccaatgaatgtcgaggctgtcgcctcaaaagaaaac-tgatgtc 786
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 461 tgttttcgttgttaatccaatgaatgtcga-gctgtcgcctcaaaagaaaacttgatgtc 519
Query: 787 gtcagcattggatttatctaaattaaa-cccaatattgcgttctaggatgggaccaccac 845
|||||||||||||||||||||| |||| || ||||||||| |||| ||||||||||||||
Sbjct: 520 gtcagcattggatttatctaaaataaatccaaatattgcg-tctaagatgggaccaccac 578
Query: 846 aaactactcancaaacgcggttatttggccgggacctcgcttt 888
|||||||||| || ||||||||| ||||||| ||| |||||||
Sbjct: 579 aaactactcagcagacgcggttagttggccgtgacgtcgcttt 621
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6310
Number of Sequences: 1807
Number of extensions: 6310
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 1047
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1031
effective length of database: 10,329,639
effective search space: 10649857809
effective search space used: 10649857809
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)