BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH09RM1.SCF screened BAC_end
(1001 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig178 1080 0.0
3x_Contig1092 876 0.0
3x_Contig1805 230 4e-60
3x_Contig1803 111 3e-24
3x_Contig1701 105 2e-22
3x_Contig1806 103 7e-22
3x_Contig1773 103 7e-22
>3x_Contig178
Length = 1315
Score = 1080 bits (545), Expect = 0.0
Identities = 683/718 (95%), Gaps = 9/718 (1%)
Strand = Plus / Minus
Query: 46 cttgtaatagcgttatgttagagctccctgca-gt-tgaaatatggtcc-caagtccggt 102
|||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct: 860 cttgtaatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggt 801
Query: 103 gcgtactgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatcca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gcgtactgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatcca 741
Query: 163 tcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgta 681
Query: 223 tggcatcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaata 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tggcatcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaata 621
Query: 283 atgttggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagtt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atgttggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagtt 561
Query: 343 gttggacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttggacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttg 501
Query: 403 tgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgt 441
Query: 463 tgcatctattg-aacagagataagcagag-acgtaacgagaaaattaatcttcaatgcga 520
||||||||||| |||| | ||||||| || || |||| | |||||||||||||||||| |
Sbjct: 440 tgcatctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgcca 381
Query: 521 cttagtcaaaactgtatcagattctgttgttctctggcgttgtaggagcctttctaatgc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttagtcaaaactgtatcagattctgttgttctctggcgttgtaggagcctttctaatgc 321
Query: 581 gccagttattgaaccaatg-ctaaatacgaagctgagctgagaggaactaggatcagcat 639
||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 320 gccagttattgaaccaatgcctaaatacgcagctgagctgagaggcactaggatcagcat 261
Query: 640 caaagctacagcacccagtatttgaacatcagnatgtacaagtatatnagtag-aagntc 698
||| |||||||||||||||||||||||||||| |||||||||| | ||| ||| |
Sbjct: 260 caaggctacagcacccagtatttgaacatcagatgcaacaagtatataactagcaagctt 201
Query: 699 cttcatccaaggag-acacccgtagtaattttcctaa-tactccgaagttcgtatact 754
| |||||||||||| ||||| |||||||||||||| ||| | ||||||| ||||||
Sbjct: 200 catcatccaaggagaacaccgtaagtaattttcctaactacacggaagttcttatact 143
>3x_Contig1092
Length = 2520
Score = 876 bits (442), Expect = 0.0
Identities = 487/498 (97%), Gaps = 3/498 (0%)
Strand = Plus / Plus
Query: 46 cttgtaatagcgttatgttagagctccctgca-gt-tgaaatatggtcc-caagtccggt 102
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||
Sbjct: 230 cttgtaatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggt 289
Query: 103 gcgtactgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatcca 162
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 290 gcgtactgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatcca 349
Query: 163 tcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcgactcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgta 409
Query: 223 tggcatcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaata 282
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 410 tggcatcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaata 469
Query: 283 atgttggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagtt 342
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 470 atgttggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaactt 529
Query: 343 gttggacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttg 402
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gttggacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttg 589
Query: 403 tgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgataaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgt 649
Query: 463 tgcatctattgaacagagataagcagagacgtaacgagaaaattaatcttcaatgcgact 522
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 650 tgcatctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggact 709
Query: 523 tagtcaaaactgtatcag 540
||||||||||||||||||
Sbjct: 710 tagtcaaaactgtatcag 727
>3x_Contig1805
Length = 19369
Score = 230 bits (116), Expect = 4e-60
Identities = 268/301 (89%), Gaps = 15/301 (4%)
Strand = Plus / Minus
Query: 571 tttctaatgcgccagttattgaaccaatgctaaatacgaagctgagctgagaggaactag 630
||||||| ||| || ||| ||||||||||||||||| |||| ||||||||||| ||||||
Sbjct: 16947 tttctaaggcgtcatttagtgaaccaatgctaaataagaagttgagctgagagcaactag 16888
Query: 631 gatcagcatcaaagctacagcacccagtatttgaacatcagnatgt-acaagtatatnag 689
|||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| ||
Sbjct: 16887 gatcagcatcaaggctacagcacccagtatttgaacatcag-atgtaacaagtatataag 16829
Query: 690 tagaagntccttcatccaaggag-acacccgtagtaattttcctaa-tactccgaagttc 747
|||||| |||||||||||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct: 16828 tagaagttccttcatccaaggagaacaccgtaagtaattttcctaattactcggaagttc 16769
Query: 748 gtatactgcccacc-atacatatctattaat--atatcagctac-agtc-aatgac-ttc 801
|||||||| ||||| |||||||||||||||| |||||||||| |||| |||||| | |
Sbjct: 16768 gtatactggccaccaatacatatctattaattattatcagctacaagtcaaatgacatcc 16709
Query: 802 atttacatg-atactacc-acccttta-gcaaact-cctacta-caaattcgatgttatt 856
||||||||| |||||||| ||||| || ||||||| ||||||| ||||||||||||||||
Sbjct: 16708 atttacatgaatactaccaaccctctaggcaaactccctactaccaaattcgatgttatt 16649
Query: 857 c 857
|
Sbjct: 16648 c 16648
Score = 103 bits (52), Expect = 7e-22
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 545 tgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaaa 604
|||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 178 tgttgttccctggcgttgtaggagcacttctaaggcgccagttattgaaccaatgctaga 119
Query: 605 tacgaagctg-agctgagaggaactaggatca 635
|| ||| ||| |||||||| ||||||||||||
Sbjct: 118 taagaatctgaagctgagacgaactaggatca 87
>3x_Contig1803
Length = 52241
Score = 111 bits (56), Expect = 3e-24
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 545 tgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaaa 604
|||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 51606 tgttgttccctggcgttgtaggagcacttctaaggcgccagttattgaaccaatgctaaa 51547
Query: 605 tacgaagctg-agctgagaggaactaggatca 635
|| ||||||| ||||| || ||||||||||||
Sbjct: 51546 taagaagctgaagctgggatgaactaggatca 51515
>3x_Contig1701
Length = 10926
Score = 105 bits (53), Expect = 2e-22
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 544 ctgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaa 603
|||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct: 5382 ctgttgttacctggcgttgtaggagcagttctaaggcgccagttattgaaacaatgctaa 5323
Query: 604 atacgaagctg-agctgagaggaactaggatca 635
||| ||||||| |||||||| ||||||||||||
Sbjct: 5322 ataagaagctgaagctgagacgaactaggatca 5290
>3x_Contig1806
Length = 53694
Score = 103 bits (52), Expect = 7e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 544 ctgttgttctctggcgttgtaggagcctttctaatgcgccagttattgaaccaatgctaa 603
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 41705 ctgttgttctctggcgttgtaggagcatttctaaggcgccagttattgaaccaatgctag 41646
Query: 604 atacgaag 611
||| ||||
Sbjct: 41645 ataagaag 41638
>3x_Contig1773
Length = 8694
Score = 103 bits (52), Expect = 7e-22
Identities = 90/99 (90%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 598 tgctaaatacgaagctgagctgagaggaactaggatcagcatcaaagctacagcacccag 657
||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct: 8525 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 8583
Query: 658 tatttgaacatcagnatgt-acaagtatatnagtagaag 695
|||||||||||||| |||| |||||||||| ||| ||||
Sbjct: 8584 tatttgaacatcag-atgtaacaagtatataagttgaag 8621
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6866
Number of Sequences: 1807
Number of extensions: 6866
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 7
length of query: 1001
length of database: 10,358,551
effective HSP length: 16
effective length of query: 985
effective length of database: 10,329,639
effective search space: 10174694415
effective search space used: 10174694415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)