BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH10FM1.SCF screened BAC_end
(1021 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1461 0.0
>3x_Contig1800
Length = 38778
Score = 1461 bits (737), Expect = 0.0
Identities = 803/822 (97%), Gaps = 3/822 (0%)
Strand = Plus / Plus
Query: 86 tatgcaacttaccatctgcagtactaacatcttcgaattcaataccgtgatttgcccatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6606 tatgcaacttaccatctgcagtactaacatcttcgaattcaataccgtgatttgcccatt 6665
Query: 146 cccagataaagccaccttggtaaaacttctccttgtagaacaactcttgatattctttca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6666 cccagataaagccaccttggtaaaacttctccttgtagaacaactcttgatattctttca 6725
Query: 206 aagagccaggaccgtttccctttgcatggccgtactcacacaagatcaaaggcttttcaa 265
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6726 aagagccaggaccgttacccattgcatggccgtactcacacaagatcaaaggcttttcaa 6785
Query: 266 acttaccattttcatcagtgtggttcttcctccacctttccataatttcaaatgttgggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6786 acttaccattttcatcagtgtggttcttcctccacctttccataatttcaaatgttgggt 6845
Query: 326 acatgaaactaaagatatctgcactcaaagcgttcaagtcaccctcataatgcacaagtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6846 acatgaaactaaagatatctgcactcaaagcgttcaagtcaccctcataatgcacaagtc 6905
Query: 386 tggtaggatccaattgtttaattaacttgtacatggctttgtggtttctgccataacaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6906 tggtaggatccaattgtttaattaacttgtacatggctttgtggtttctgccataacaag 6965
Query: 446 cttcgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaagtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6966 cttcgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaagtt 7025
Query: 506 gggaagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatgggcat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7026 gggaagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatgggcat 7085
Query: 566 taacatcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgacgat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7086 taacatcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgacgat 7145
Query: 626 taaatggctcttgaacaccatgagtttcaagatctgcctcgtcaatgacccagaagccca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7146 taaatggctcttgaacaccatgagtttcaagatctgcctcgtcaatgacccagaagccca 7205
Query: 686 gcttatcgaagaggtcatacaccttangatggtttggataatgcgagttacgaacagcct 745
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 7206 gcttatcgaagaggtcatacaccttaggatggtttggataatgcgagttacgaacagcat 7265
Query: 746 tgatgntaaacttcttcattagaat-aagtccctaaacacaaaatctaatggcacaagct 804
||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 7266 tgatgttaaacttcttcattagaatcaagtccctaacaacaaaatctaatggcac-agct 7324
Query: 805 ctaccgaacctttggatggngatcatgtctgttgacccctcttaagaaaatgtctttgcc 864
|||||||||| |||||||| |||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 7325 ctaccgaacc-ttggatggtgatcatgtctgttgacacctctaaagagaatgtctttgcc 7383
Query: 865 attaacaagaatgttaccggccctcaactccacttggctgaa 906
||||||| |||||||||| || ||||||||||||| |||||
Sbjct: 7384 attaacagtaatgttaccgtccttcaactccacttgtctgaa 7425
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6276
Number of Sequences: 1807
Number of extensions: 6276
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 1021
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1005
effective length of database: 10,329,639
effective search space: 10381287195
effective search space used: 10381287195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)