BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH11FM1.SCF screened BAC_end
(1009 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1433 0.0
>3x_Contig1762
Length = 22098
Score = 1433 bits (723), Expect = 0.0
Identities = 745/751 (99%), Gaps = 1/751 (0%)
Strand = Plus / Plus
Query: 86 ctcggctactcactaacctcactagtttaatgaattggcctcaaatctggattgactatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8269 ctcggctactcactaacctcactagtttaatgaattggcctcaaatctggattgactatt 8328
Query: 146 accactcgccggaagatcgattacatcccttgacaattgtatttgatcaacccattgatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8329 accactcgccggaagatcgattacatcccttgacaattgtatttgatcaacccattgatg 8388
Query: 206 aacctccatcgatattcatgactttatacagtgctagacaacagtctcatgtcccactaa 265
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8389 aacctccatcgatattcaagactttatacagtgctagacaacagtctcatgtcccactaa 8448
Query: 266 cgccattcattacactatcacgtctaataaatgacgattcatgcgatattgatgatatcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8449 cgccattcattacactatcacgtctaataaatgacgattcatgcgatattgatgatatcg 8508
Query: 326 tgacccctctaaccaacaaaatgttgaaattgtttcaatccttaacaggcaatactacac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509 tgacccctctaaccaacaaaatgttgaaattgtttcaatccttaacaggcaatactacac 8568
Query: 386 taaatctcttacaattactgggacagctgaatattgggaaaactgaattggaagctctac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8569 taaatctcttacaattactgggacagctgaatattgggaaaactgaattggaagctctac 8628
Query: 446 ctgttgggatatacgtgcctttgaaaaggttattgttagatgttgaaaatgaaatcgacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8629 ctgttgggatatacgtgcctttgaaaaggttattgttagatgttgaaaatgaaatcgacc 8688
Query: 506 atgttgacgaaaacgtcgatatcgatttgattgacagaactgatttgcgaataataaaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8689 atgttgacgaaaacgtcgatatcgatttgattgacagaactgatttgcgaataataaaag 8748
Query: 566 atttcatttcttcacaacaacagaagaagcttcctggtcagtttaaaagccagaatattt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8749 atttcatttcttcacaacaacagaagaagcttcctggtcagtttaaaagccagaatattt 8808
Query: 626 ccaacatagcatcatcagaaccgcgatctattttgcaaatttacaaacaaattgctgaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8809 ccaacatagcatcatcagaaccgcgatctattttgcaaatttacaaacaaattgctgaga 8868
Query: 686 agagtctgaatggtagttcaaaatcttctaaaattgaaagcataaactatgatatgatct 745
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8869 agagtctgaatgtaagttcaaaatcttctaaaattgaaagcataaactatgatatgatct 8928
Query: 746 ctacgaagaaaccaattttcaatcacaaggagctcttttctgtatttggtaaaaacttta 805
||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct: 8929 ctacgaagaaaccaattttcaatcacaaggagctc-tttctggattttgtaaaaacttta 8987
Query: 806 tcctattctaaaacgcattctgttgatttac 836
|||||||||||||||||||||||||||||||
Sbjct: 8988 tcctattctaaaacgcattctgttgatttac 9018
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8134
Number of Sequences: 1807
Number of extensions: 8134
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 1009
length of database: 10,358,551
effective HSP length: 16
effective length of query: 993
effective length of database: 10,329,639
effective search space: 10257331527
effective search space used: 10257331527
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)