BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZH11RM1.SCF screened BAC_end
(1005 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1015 0.0
3x_Contig273 353 4e-97
3x_Contig1214 176 6e-44
>3x_Contig1338
Length = 8134
Score = 1015 bits (512), Expect = 0.0
Identities = 625/647 (96%), Gaps = 13/647 (2%)
Strand = Plus / Minus
Query: 320 cacaaacaaaaagattggagtagttacaactgctaatgaaaatagaacagtattaccagt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8102 cacaaacaaaaagattggagtagttacaactgctaatgaaaatagaacagtattaccagt 8043
Query: 380 gtggtataatggtttatcattttctctgtagatctgagcggaatagatagccccaacctg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8042 gtggtataatggtttatcattttctctgtagatctgagcggaatagatagccccaacctg 7983
Query: 440 gacagccatattatacaatgcagaactcaaagctctggttttgatggagttggaatttct 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7982 gacagccatattatacaatgcagaactcaaagctctggttttgatggagttggaatttct 7923
Query: 500 ggagacccaactgacacaaattgcgtggacatatggggaacctagcaatagtgtacataa 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7922 ggagacccaactgacacaaattgcgtggacatatggggaacctagcaatagtgtacataa 7863
Query: 560 tgcaaacgtaggccaagcttcaactagggaccccttccaccatcttagaatagcgaggaa 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7862 tgcaaacgtaggccaagcttcaactagggaccccttccaccatcttagaatagcgaggaa 7803
Query: 620 gaaggcattccatacagctgagatgatacccatataggctctctgtttgactcgttctga 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7802 gaaggcattccatacagctgagatgatacccatataggctctctgtttgactcgttctga 7743
Query: 680 gaaccacgtgattccgagaagg-aaatgatatgaataacctgatatggaatagaaagtag 738
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7742 gaaccacgtgattccgagaaggaaaatgatatgaataacctgatatggaatagaaagtag 7683
Query: 739 ctgcacattgtatgtgctgaaccccacagattttagagttagggtgagatattgttgtta 798
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7682 ctgcacattgaatgtgctgaaccccacagattttagagttagggtgagata-tgttgtta 7624
Query: 799 gaacattcggttgcacattagcaatcaaccc-atgaagtaaatt-gccataaatcataat 856
||||||||| | |||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct: 7623 gaacattcgttggcacataagcaatcaacccaatgaagtaaattggccataaatcataat 7564
Query: 857 cggagatggc-gaccaaatc-atttg-aagagattgg-tgcctg-tatgcat-ttaccct 910
| |||||||| ||||||||| ||||| |||||||||| || ||| ||||||| | |||||
Sbjct: 7563 cagagatggcagaccaaatcaatttgaaagagattggttgtctgttatgcatatcaccct 7504
Query: 911 tagatggatca--tcttaggactctattaac-acgatcttctcctct 954
||||||||||| ||| || ||||||||||| |||||||||||||||
Sbjct: 7503 tagatggatcatctctaagaactctattaacaacgatcttctcctct 7457
>3x_Contig273
Length = 1810
Score = 353 bits (178), Expect = 4e-97
Identities = 196/202 (97%)
Strand = Plus / Minus
Query: 43 ctttgagttcgattcaaaagaaccaaaggacaattttttttcatatataaagtatagaga 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctttgagttcgattcaaaagaaccaaaggacaattttttttcatatataaagtatagaga 283
Query: 103 aagtgtaaattttggtgtaagtgcgatgtcattgaaatgaaataaataaaacaattcaca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aagtgtaaattttggtgtaagtgcgatgtcattgaaatgaaataaataaaacaattcaca 223
Query: 163 aaatagagatctaattagaagtttactcagcaaatctaaagtctaatctcttattagccg 222
|||||||||||||||||||||||||||||||||||||||||| | || | |||||||| |
Sbjct: 222 aaatagagatctaattagaagtttactcagcaaatctaaagtatcatatattattagcag 163
Query: 223 tatcagtggtattatgaatata 244
||| ||||||||||||||||||
Sbjct: 162 tataagtggtattatgaatata 141
>3x_Contig1214
Length = 6334
Score = 176 bits (89), Expect = 6e-44
Identities = 200/237 (84%)
Strand = Plus / Minus
Query: 395 atcattttctctgtagatctgagcggaatagatagccccaacctggacagccatattata 454
|||||||| ||||||||| |||| |||||| || || || || || || |||||||||||
Sbjct: 846 atcattttttctgtagatttgagtggaataaattgcacctacttgaacggccatattata 787
Query: 455 caatgcagaactcaaagctctggttttgatggagttggaatttctggagacccaactgac 514
||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||
Sbjct: 786 caatgcagaactcaaagctctagttttgatagaattggagtttctagagacccaactaac 727
Query: 515 acaaattgcgtggacatatggggaacctagcaatagtgtacataatgcaaacgtaggcca 574
||| ||||| || || ||||| ||| || |||| |||||| || || || ||||||||
Sbjct: 726 acagattgcatgcacgtatggaccacccagtaataatgtacacaacgcgaatgtaggcca 667
Query: 575 agcttcaactagggaccccttccaccatcttagaatagcgaggaagaaggcattcca 631
|| ||||||||||| ||||||||||||||||||| | | ||||| |||||||||||
Sbjct: 666 tgcctcaactagggatcccttccaccatcttagaacaccaaggaacaaggcattcca 610
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8220
Number of Sequences: 1807
Number of extensions: 8220
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 3
length of query: 1005
length of database: 10,358,551
effective HSP length: 16
effective length of query: 989
effective length of database: 10,329,639
effective search space: 10216012971
effective search space used: 10216012971
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)