BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA02FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 1610 0.0
>3x_Contig1607
Length = 10159
Score = 1610 bits (812), Expect = 0.0
Identities = 859/871 (98%), Gaps = 3/871 (0%)
Strand = Plus / Plus
Query: 87 taaatgtttaaaggtttaattaagtctttaatggaatgatggctcaacttttaatatttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6500 taaatgtttaaaggtttaattaagtctttaatggaatgatggctcaacttttaatatttc 6559
Query: 147 tcttgaattgaaaagaaatgaaaatttcaaaggaaaaggaaaaaaaaactggaaatgaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6560 tcttgaattgaaaagaaatgaaaatttcaaaggaaaaggaaaaaaaaactggaaatgaga 6619
Query: 207 gaatattaattatttttactttatatacatttatattagaagtttgtctggtcatatatt 266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6620 gaatattaattatgggtactttatatacatttatattagaagtttgtctggtcatatatt 6679
Query: 267 ttgaatcggacgcagatggagaatagacctcgtatttatacgttttatgtgctacaatag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6680 ttgaatcggacgcagatggagaatagacctcgtatttatacgttttatgtgctacaatag 6739
Query: 327 atatcgtgcccaatcttgtgaatttgtttttttagttcccagatgatataatgactctgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6740 atatcgtgcccaatcttgtgaatttgtttttttagttcccagatgatataatgactctgg 6799
Query: 387 ttgggtctgagacagataaggtatcccggattgcaactacccctctgtaagttacctcaa 446
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 6800 ttgggtctgagacagataaggtatcccggattgcaactccccctctgtaag-tacctcaa 6858
Query: 447 gtcattcactggcatatatctctacatataaaaatataatgataattatgctaacaattc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6859 gtcattcactggcatatatctctacatataaaaatataatgataattatgctaacaattc 6918
Query: 507 tagccctttgtatcttggtccggaaatcggtaagtaacttcctctttttttttttgctaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6919 tagccctttgtatcttggtccggaaatcggtaagtaacttcctctttttttttttgctaa 6978
Query: 567 acgatatcctttccctacagggacacccagaagaaatcgggagcagtattagccagccac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979 acgatatcctttccctacagggacacccagaagaaatcgggagcagtattagccagccac 7038
Query: 627 tacagataccacacatcagtgtttctaacattcatccagaaccgagaaaaatctgttaag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7039 tacagataccacacatcagtgtttctaacattcatccagaaccgagaaaaatctgttaag 7098
Query: 687 tttcgggaaaaaacagtgacctctaagaactcggctttcatagaggtatgacttgtgata 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7099 tttcgggaaaaaacagtgacctctaagaactcggctttcatagaggtatgacttgtgata 7158
Query: 747 agtagttctccactt-aaaaaatcttttaaatctttccagtggtatcagaagaatggtcg 805
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7159 agtagttctccacttaaaaaaatcttttaaatctttccagtggtatcagaagaatggtcg 7218
Query: 806 actttacattgtgtagtacgcttagtttcagtaccagtaacgtactgcgccaggtccgtc 865
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7219 actttacattgtgtagtacgctaagtttcagtaccagtaacgtactgcgccaggtccgtc 7278
Query: 866 ttctctgttgaacatcttcccttggctagcgtcagcacctgattgttgcccgtttctttg 925
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 7279 ttctctgttgaacatcttcccttgtctagcgtcagcacctgattgttgccgttttctttg 7338
Query: 926 ttcattcaaa-tttcagnttgtttttcaaat 955
|||||||||| |||||| |||||||||||||
Sbjct: 7339 ttcattcaaattttcagtttgtttttcaaat 7369
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,560
Number of Sequences: 1807
Number of extensions: 13560
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)