BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA02RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig869 1411 0.0
>3x_Contig869
Length = 2873
Score = 1411 bits (712), Expect = 0.0
Identities = 715/716 (99%)
Strand = Plus / Minus
Query: 46 tgaatatttaaacatatatatatatatatcaatccgatatttattcactcacacaacaca 105
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 716 tgaatatttaaacatatatatatatataacaatccgatatttattcactcacacaacaca 657
Query: 106 tgctcatatatatatatatatatagatatatattgggatattgcctgaattagcacaatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tgctcatatatatatatatatatagatatatattgggatattgcctgaattagcacaatt 597
Query: 166 atattaccactgtagttcacaaacgttatctgcttcgtctctcgctccacatatttgcag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atattaccactgtagttcacaaacgttatctgcttcgtctctcgctccacatatttgcag 537
Query: 226 ataactaactttatctttttcctagaaagtaatgtttgctaccggtatcagcaaaggcct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ataactaactttatctttttcctagaaagtaatgtttgctaccggtatcagcaaaggcct 477
Query: 286 tataggagtggctttgcccataagatccattcatgggtcaatgcgcggcccaattcaaac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tataggagtggctttgcccataagatccattcatgggtcaatgcgcggcccaattcaaac 417
Query: 346 ggtaaacaaactgcccttacgggcagtttgtttggcctcttttaagccaagtgtcagaaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggtaaacaaactgcccttacgggcagtttgtttggcctcttttaagccaagtgtcagaaa 357
Query: 406 tttccatgtctcttcctgtcttagatctgaaattgaacaagagaaaagtacccctccagt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tttccatgtctcttcctgtcttagatctgaaattgaacaagagaaaagtacccctccagt 297
Query: 466 gggtctggtaaagaccagtggatttaccagtaaactgggcaaactggtgaaatggtccat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gggtctggtaaagaccagtggatttaccagtaaactgggcaaactggtgaaatggtccat 237
Query: 526 tttcaccgctggtatcgttgcctctggtgttggtgctatcattatcgggttctttatcta 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttcaccgctggtatcgttgcctctggtgttggtgctatcattatcgggttctttatcta 177
Query: 586 cgattccaccacttataagtcatgcggtactgccgttgagatcaaagtgccaaagttggc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cgattccaccacttataagtcatgcggtactgccgttgagatcaaagtgccaaagttggc 117
Query: 646 tcttaacccagaactcggtggtcccgagaatttgcccatcttacgagaaactttggacgc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcttaacccagaactcggtggtcccgagaatttgcccatcttacgagaaactttggacgc 57
Query: 706 gtatgactctgaaatgaaggaattgacctcgtataagccaaaattggtcgtcttgg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gtatgactctgaaatgaaggaattgacctcgtataagccaaaattggtcgtcttgg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,470
Number of Sequences: 1807
Number of extensions: 15470
Number of successful extensions: 3372
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)