BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA03FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig669 1088 0.0
>3x_Contig669
Length = 2015
Score = 1088 bits (549), Expect = 0.0
Identities = 590/597 (98%), Gaps = 5/597 (0%)
Strand = Plus / Plus
Query: 349 gtaaaagttcatcaactgatttgttggttagagcagggctgctgctggacgattttttac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaaaagttcatcaactgatttgttggttagagcagggctgctgctggacgattttttac 60
Query: 409 ctttcttttgagaaatattagctggtttag-ttgcttgctgagcggaagcgag-tttctt 466
|||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 61 ctttcttttgagaaatattagctggtttagcttgcttgctgagcggaagcgcgctttctt 120
Query: 467 ttcttgttgttgcttagtaataatacctttaatagtttcggaccattgtttcgaagtcaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcttgttgttgcttagtaataatacctttaatagtttcggaccattgtttcgaagtcaa 180
Query: 527 ggtagtttgatcatttaaccctaattctttcgagaaaatggatttggctttctcaatatg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtagtttgatcatttaaccctaattctttcgagaaaatggatttggctttctcaatatg 240
Query: 587 agataatgcatgagacatgtcatccaaagaggtatacaagttggcaatacgtgattcatt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agataatgcatgagacatgtcatccaaagaggtatacaagttggcaatacgtgattcatt 300
Query: 647 ttgaccatatggtaatgtttcttcgctaccagtgatctttagaagcaactcagacagctt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgaccatatggtaatgtttcttcgctaccagtgatctttagaagcaactcagacagctt 360
Query: 707 gttcaaaatcttgatctgaactttcttatcctcagtactagcagcaatttggaataataa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttcaaaatcttgatctgaactttcttatcctcagtactagcagcaatttggaataataa 420
Query: 767 attgaatacattaaccctaccagagtggacaaaaggagctaaaagcttcaataattcatg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attgaatacattaaccctaccagagtggacaaaaggagctaaaagcttcaataattcatg 480
Query: 827 gactttcttcaatacaagcgcagagttgtagatagagccttggccgtattcaa-gtatgc 885
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 gactttcttcaatacaagcgcagagttgtagatagagccttggccgtattcaaggtatgc 540
Query: 886 caagtttgacaaaattctaacgggttcaaatgaatcaacaaccgt-acacctttcgg 941
||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 541 caagtttgacaaaattctaacggtttcaaatgaatcaac-accgtaacacctttcgg 596
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9930
Number of Sequences: 1807
Number of extensions: 9930
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)