BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZA03RM1.SCF screened BAC_end
         (973 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1643                                                        1657   0.0  

>3x_Contig1643 
          Length = 10865

 Score = 1657 bits (836), Expect = 0.0
 Identities = 911/927 (98%), Gaps = 7/927 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   ctgggttagatatgtcaaggtaagagactctaaacataacaatagagaatattatggtat 107
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 ctgggttagatatgtcaagg-aagagactctaaacataacaatagagaatattatggtat 1633

                                                                        
Query: 108  taattaatatactattagtgaaaggttggaatgtgaatgttgaagggtacgcgtactact 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 taattaatatactattagtgaaaggttggaatgtgaatgttgaagggtacgcgtactact 1573

                                                                        
Query: 168  gtaccactattcattaaaatttatcatatctcatccctgatacagaaattaattatggta 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 1572 gtaccactattcattaaaatttatcatatctcatccctgatacagaaattaag-atggta 1514

                                                                        
Query: 228  cgtcgagcaaaattatttgacattgttactgaattaactgcatgatgatgtttagttttg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 cgtcgagcaaaattatttgacattgttactgaattaactgcatgatgatgtttagttttg 1454

                                                                        
Query: 288  ttcgttagattcgttactggatggggtttgagtgttatcgttagcagttgcatcggactt 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 ttcgttagattcgttactggatggggtttgagtgttatcgttagcagttgcatcggactt 1394

                                                                        
Query: 348  ttcagcattattttcagtaacgttcttagaagacttttttctttggaacaaagagaaacc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 ttcagcattattttcagtaacgttcttagaagacttttttctttggaacaaagagaaacc 1334

                                                                        
Query: 408  tggatgagattgttccttgctgtcaacgtcttcttctaattcatcttccttttctagatc 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 tggatgagattgttccttgctgtcaacgtcttcttctaattcatcttccttttctagatc 1274

                                                                        
Query: 468  gtcatcgtatagacccaacgcgttaccgtgatcttcgatttcagcaagagatagttttgg 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1273 gtcatcgtatagacccaacgcgttaccgtgatcttcgatttcagcaagagatagttttgg 1214

                                                                        
Query: 528  caagttggcagcgactctccatgcagcagtcttatcagtgtaagacttggcgaagatgat 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1213 caagttggcagcgactctccatgcagcagtcttatcagtgtaagacttggcgaagatgat 1154

                                                                        
Query: 588  atcgatttcttccaaagttctacctgcagtttctgggtagaagaagaagatgactggcaa 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1153 atcgatttcttccaaagttctacctgcagtttctgggtagaagaagaagatgactggcaa 1094

                                                                        
Query: 648  atagaggaagttaatacacgcgaagaataagtagcaaccccagccagcgtcttgaatgaa 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 atagaggaagttaatacacgcgaagaataagtagcaaccccagccagcgtcttgaatgaa 1034

                                                                        
Query: 708  aattggggtaaacatgacaacggncaagttacacaaccagttggtacatgtggaaaaggc 767
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 1033 aattggggtaaacatgacaacggcaaagttacacaaccagttggtacatgtggaaaaggc 974

                                                                        
Query: 768  attagtcatgggacgaactctcatagaagcaatttctggtgggtaaatccatggtagaga 827
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973  attagtcatggaacgaactctcatagaagcaatttctggtgggtaaatccatggtagaga 914

                                                                        
Query: 828  tagaatggacataccgaagaagacgattaacaagaaccaaccaacgggctgcacccctta 887
            ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||||
Sbjct: 913  tagaatggacataccgaagaagacgataaacaagaacaaaccaac-ggctgca-ccctta 856

                                                                        
Query: 888  gcattttgtgtagtgtcatgaaccaaacaggc-aatgttatcaagaaagaacaacctttg 946
            |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 855  gcattttgtgtagtgtcatgaaccaaacaggcaaatgtaatcaagaaagaacaacc-ttg 797

                                       
Query: 947  acggaaagcaccc-acattaacaattt 972
            || |||||||||| |||| ||||||||
Sbjct: 796  accgaaagcacccaacataaacaattt 770


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8462
Number of Sequences: 1807
Number of extensions: 8462
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)