BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA06FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1597 1588 0.0
>3x_Contig1597
Length = 14240
Score = 1588 bits (801), Expect = 0.0
Identities = 864/881 (98%), Gaps = 4/881 (0%)
Strand = Plus / Minus
Query: 85 ctacgctaccagaattaacagaaccattgaaatataacctaacaccgccaattgtgatag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8803 ctacgctaccagaattaacagaaccattgaaatataacctaacaccgccaattgtgatag 8744
Query: 145 ctaccaaaaataaattgttattctcttctttcgaaaccacctctactttaactattttca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8743 ctaccaaaaataaattgttattctcttctttcgaaaccacctctactttaactattttca 8684
Query: 205 aatatttgttactttttatagcagctcctctagccggagtcgttcccatgatacgtttaa 264
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8683 aatatttgttacccaagatagcagctcctctagccggagtcgttcccatgatacgtttaa 8624
Query: 265 tataagagggttcgattgtagttggtccatctaaggatttaccattaatcttataagctc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8623 tataagagggttcgattgtagttggtccatctaaggatttaccattaatcttataagctc 8564
Query: 325 ggatgactgattttgatgataatgagtacaaaataccacgcgattggtctacagtcaaat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8563 ggatgactgattttgatgataatgagtacaaaataccacgcgattggtctacagtcaaat 8504
Query: 385 gtgtaatgtattcttgtgcatactttgaatcttcttcaaataaagattgtacaagtgccg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8503 gtgtaatgtattcttgtgcatactttgaatcttcttcaaataaagattgtacaagtgccg 8444
Query: 445 agcctggaatcttggagaaaatatttgtggggagtaaactcaaaagagcagactgtgtca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8443 agcctggaatcttggagaaaatatttgtggggagtaaactcaaaagagcagactgtgtca 8384
Query: 505 aacaaagtttgctgcatttattgttaaaccaatcttctgaagatgaatattgaagtt-cc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8383 aacaaagtttgctgcatttattgttaaaccaatcttctgaagatgaatattgaagttccc 8324
Query: 564 caaatgttggtcccattgctgttaccagaaaagaagatttgtcctgttttctcataataa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8323 caaatgttggtcccattgctgttaccagaaaagaagatttgtcctgttttctcataataa 8264
Query: 624 acgatttcatgtacatccaatccatgaacagaaacgctcatccctgtgttgaagatattg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8263 acgatttcatgtacatccaatccatgaacagaaacgctcatccctgtgttgaagatattg 8204
Query: 684 aacgagccgctgattctgtcataagaaattgcgagtatgtatatgtcaaaaggagttgtt 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8203 aacgagccgctgattctgtcataagaaattgcgagtatgtatatgtcaaaaggagttgtt 8144
Query: 744 atcaataacaagtggttgattgattccacgaatgtatcangtttcggtttcactanggca 803
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 8143 atcaataacaagtggttgattgattccacgaatgtatcaggtttcggtttcactagggca 8084
Query: 804 actngtaatatggtatgcttgatgtcatctattgattggaaatctgaagggttattataa 863
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8083 acttgtaatatggtatgcttgatgtcatctattgattggaaatctgaagggttattataa 8024
Query: 864 tgccaggagatcaacttgctatcaacagtgatccaancacgttcaatatcggggaataaa 923
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 8023 tgccagaggatcaacttgctatcaacagtgatccaacaacgttcaatatcgggaaataaa 7964
Query: 924 -ccatatttgttttgattt-agcagtaga-acttgctgcaa 961
|||||||||||||||||| ||||||||| |||||||||||
Sbjct: 7963 cccatatttgttttgatttcagcagtagatacttgctgcaa 7923
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7770
Number of Sequences: 1807
Number of extensions: 7770
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)