BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC20ZA07FM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig806 1294 0.0 >3x_Contig806 Length = 2480 Score = 1294 bits (653), Expect = 0.0 Identities = 823/854 (96%), Gaps = 22/854 (2%) Strand = Plus / Minus Query: 85 acgaattgagaaccaagtccaaggaccaattggaacaacaattggttgaattgaagaagg 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1593 acgaattgagaaccaagtccaaggaccaattggaacaacaattggttgaattgaagaagg 1534 Query: 145 aattggccgaattgaaggttcaaaaattgtccagaccatctttgccaaaaatcaacactg 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1533 aattggccgaattgaaggttcaaaaattgtccagaccatctttgccaaaaatcaacactg 1474 Query: 205 tcagaaagaacattttttgtgtcttgactgttatctctcaaaaccaaagacaagctgtca 264 |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1473 tcagaaagaacattgctcgtgtcttgactgttatctctcaaaaccaaagacaagctgtca 1414 Query: 265 gagaattgtacaagggtaagaagtaccaaccaaaggacttgagagccaagaagaccagag 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 gagaattgtacaagggtaagaagtaccaaccaaaggacttgagagccaagaagaccagag 1354 Query: 325 ctttgagaagagctttgaccaaattcgaagcttcccaagttactgaaaagcaaagaaaga 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1353 ctttgagaagagctttgaccaaattcgaagcttcccaagttactgaaaagcaaagaaaga 1294 Query: 385 agcaaattgctttcccacaaagaaagtatgctatcaaggcttaagaaaccgttcttccta 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1293 agcaaattgctttcccacaaagaaagtatgctatcaaggcttaagaaaccgttcttccta 1234 Query: 445 ttacattattaagaacgttttttcatgttaaattagtttacatctttctacataatctct 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1233 ttacattattaagaacgttttttcatgttaaattagtttacatctttctacataatctct 1174 Query: 505 aacatcattgttgtatttgagtacacgcattttgcaaaatagacacagggtttctgttta 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1173 aacatcattgttgtatttgagtacacgcattttgcaaaatagacacagggtttctgttta 1114 Query: 565 atctcatgttagaatgatcctctgcatggaatcgaacgccacttgctgtgtcactttaag 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 atctcatgttagaatgatcctctgcatggaatcgaacgccacttgctgtgtcactttaag 1054 Query: 625 attatattgacgaaattttttacctacatactttattttagtggggtatgctattctttc 684 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1053 attatattgacgaaattttttacctacatac-ttattttagtggggtatgctattctttc 995 Query: 685 ttcgaacgcttagattttctgaa-tccaaga-tttctccttcacttc--cgttgggtata 740 ||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||| Sbjct: 994 ttcgaacgcttagattttctgaattccaagattttctccttcaactccacgttgggtata 935 Query: 741 a-ctcctcaag-ttcaat-gtgatctgttgaa-gggtctgttgagtcccttagc-aatgt 795 | ||||||||| |||||| ||||||||||||| |||||||||||||| |||||| ||||| Sbjct: 934 acctcctcaagtttcaatggtgatctgttgaaggggtctgttgagtcgcttagcaaatgt 875 Query: 796 gnctt-atggtgcttttatcaat-gtaacttt-gaagtagggag-atgact-ggtctttc 850 | || ||||||||| ||||||| |||||||| ||||||||||| |||||| |||||||| Sbjct: 874 gctttaatggtgcttctatcaatggtaactttggaagtagggagaatgactgggtctttc 815 Query: 851 -tgatag-ataca-taaaggatccaag-attcttctgga-catctcccatttc--agtct 903 |||||| ||||| ||||||||||||| ||||||||||| ||||||||||||| ||||| Sbjct: 814 atgatagtatacattaaaggatccaagaattcttctggagcatctcccatttccaagtct 755 Query: 904 tcttcttcctccag 917 |||||||||||||| Sbjct: 754 tcttcttcctccag 741 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8197 Number of Sequences: 1807 Number of extensions: 8197 Number of successful extensions: 72 Number of sequences better than 1.0e-20: 1 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)