BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA08FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 1425 0.0
3x_Contig1262 111 3e-24
>3x_Contig1710
Length = 16151
Score = 1425 bits (719), Expect = 0.0
Identities = 760/770 (98%), Gaps = 3/770 (0%)
Strand = Plus / Minus
Query: 88 tcattccatgtcgtctcaagtgccttatcattttgaaacaaccaagtaggtatgaatatg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 tcattccatgtcgtctcaagtgccttatcattttgaaacaaccaagtaggtatgaatatg 954
Query: 148 aaataaattattaggaaaccagtacccaattgatgtcccacatcgatataatcgatacat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 aaataaattattaggaaaccagtacccaattgatgtcccacatcgatataatcgatacat 894
Query: 208 aatcttatatccttttgatcttcatcctggatcggttataccaagcacgaattcattacg 267
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 aatcttatatccgtctgatcttcatcctggatcggttataccaagcacgaattcattacg 834
Query: 268 tcagcatacatgctccagtaccacattgtattggcacagacgcaaattacttattctttg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tcagcatacatgctccagtaccacattgtattggcacagacgcaaattacttattctttg 774
Query: 328 caaaaacgatataaaagcgatgcatgattccgaggagatacacagtacgaaataaaccca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 caaaaacgatataaaagcgatgcatgattccgaggagatacacagtacgaaataaaccca 714
Query: 388 gggtattaaattcgatattcgcttttgacacgtcgcattccttccaatgtggcactctaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gggtattaaattcgatattcgcttttgacacgtcgcattccttccaatgtggcactctaa 654
Query: 448 catgtcttaatcctcctctttcttctgggatcttactgccgttctctttttttttttttt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 catgtcttaatcctcctctttcttctgggatcttactgccgttctctttttttttttttt 594
Query: 508 ttttttgcctgtttggaaaagaaaaagtgaaagctagaatttgattgtcatctttggaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttttttgcctgtttggaaaagaaaaagtgaaagctagaatttgattgtcatctttggaaa 534
Query: 568 ttgccgtttgaaatggaacaatggataagcgtacggggcgtctcaagggcacagtgcctc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttgccgtttgaaatggaacaatggataagcgtacggggcgtctcaagggcacagtgcctc 474
Query: 628 gcagaggcg-cagtattccatacgataggtagcaatgttttctgtattattttagtacat 686
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gcagaggcgccagtattccatacgataggtagcaatgttttctgtattattttagtacat 414
Query: 687 cgtgcatactgataatacaatgcatgctttttttttcttacttttgctgtaataatattt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cgtgcatactgataatacaatgcatgctttttttttcttacttttgctgtaataatattt 354
Query: 747 tctcataagcangagctaaaaatgctcaaagcacgtctgcggtatcaattgtcctttgtt 806
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tctcataagcagaggctaaaaatgctcaaagcacgtctgcggtatcaattgtcctttgtt 294
Query: 807 tcaggtgcaatccaaatctaagtcctggttttcgcttttctattcgcaga 856
||||| ||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct: 293 tcaggggcaatcc-aatctaagtcctggtttccgc-tttctattcgcaga 246
>3x_Contig1262
Length = 7137
Score = 111 bits (56), Expect = 3e-24
Identities = 97/104 (93%), Gaps = 5/104 (4%)
Strand = Plus / Minus
Query: 867 gagatgggttttccatatctgggtaaatgtccattttcgtggcggnaatttgagtggatg 926
||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 7134 gagatgggttt-ccatatctgg-taaatgtccattttcgtggcgg-aatttgagtggatg 7078
Query: 927 gtaaggt-aacgcacctgggcttttttctacattggcccgcagc 969
|||||| |||||| ||| |||||||||||||||||||||||||
Sbjct: 7077 -taaggttaacgcagctgtgcttttttctacattggcccgcagc 7035
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,586
Number of Sequences: 1807
Number of extensions: 21586
Number of successful extensions: 4063
Number of sequences better than 1.0e-20: 2
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)