BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA09FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 952 0.0
3x_Contig768 180 3e-45
>3x_Contig1737
Length = 17214
Score = 952 bits (480), Expect = 0.0
Identities = 516/524 (98%), Gaps = 3/524 (0%)
Strand = Plus / Minus
Query: 434 tatgtgcggtggatttgaacgctgccactgggaaacaggccaccaaagtcaagaagaaca 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17212 tatgtgcggtggatttgaacgctgccactgggaaacaggccaccaaagtcaagaagaaca 17153
Query: 494 agaagatgataaccaagaaaactgtggtggtaaaggaggaggaaccagttcaggagaagc 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17152 agaagatgataaccaagaaaactgtggtggtaaaggaggaggaaccagttcaggagaagc 17093
Query: 554 agctacaagagctggtgcaggagctggagaaaccgcctttatcggagcctgtgattgaga 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17092 agctacaagagctggtgcaggagctggagaaaccgcctttatcggagcctgtgattgaga 17033
Query: 614 tagagagagtggaggaagagggtaattctccacagcgggtcaatatggctcttgtttcgt 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17032 tagagagagtggaggaagagggtaattctccacagcgggtcaatatggctcttgtttcgt 16973
Query: 674 ccacaccactgtctcctctttctctgtctctgttcgatgggtccaaggatgaattggacg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16972 ccacaccactgtctcctctttctctgtctctgttcgatgggtccaaggatgaattggacg 16913
Query: 734 atagtatcgccggcagccagcggatcggtggttttcacaacgatgatgacgatcttgtgc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16912 atagtatcgccggcagccagcggatcggtggttttcacaacgatgatgacgatcttgtgc 16853
Query: 794 aaagcctagatcttgaattctttatgccttctatttcacttccaagcttgatgattcctg 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16852 aaagcctagatcttgaattctttatgccttctatttcacttccaagcttgatgattcctg 16793
Query: 854 atcttctactgcagtcaccaaagatggcagaaatcttttgatttctttgtggaaccagac 913
|||| ||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||
Sbjct: 16792 atctcctactgcagtcaccagagatggcag-aatcgtttgatttctttgt-gaaccagac 16735
Query: 914 ttcaaaattgtttgtttctgcccccaagctcaatttatacccgt 957
|||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct: 16734 ttcaaaattgttggttcctg-ccccaagctcaatttatacccgt 16692
>3x_Contig768
Length = 2062
Score = 180 bits (91), Expect = 3e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 88 tgaaatgaatcatcatttcttctacaataccaataagacaaagggtaaagtggtaaagac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tgaaatgaatcatcatttcttctacaataccaataagacaaagggtaaagtggtaaagac 32
Query: 148 cgtgtcctgtattcagccattgattattgcc 178
|||||||||||||||||||||||||||||||
Sbjct: 31 cgtgtcctgtattcagccattgattattgcc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7604
Number of Sequences: 1807
Number of extensions: 7604
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)