BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA09RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1660 1588 0.0
>3x_Contig1660
Length = 13166
Score = 1588 bits (801), Expect = 0.0
Identities = 905/925 (97%), Gaps = 13/925 (1%)
Strand = Plus / Plus
Query: 48 aatcgtttgaacaattcaaagaagtgttcagttcgtttgaaaaagtgaaccataacgaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11060 aatcgtttgaacaattcaaagaagtgttcagttcgtttgaaaaagtgaaccataacgaag 11119
Query: 108 tcatcaagatggaaaacgatttaaagaagttaaagacgctccatttgaacaatctaatag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11120 tcatcaagatggaaaacgatttaaagaagttaaagacgctccatttgaacaatctaatag 11179
Query: 168 atttacaatggaacttacaaaattgtgtcaccaacggtataatgagtatgggacacgagg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11180 atttacaatggaacttacaaaattgtgtcaccaacggtataatgagtatgggacacgagg 11239
Query: 228 atacgaaccgggtattactagcacaagatgaattagacatgacaatcaattttgtcagaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11240 atacgaaccgggtattactagcacaagatgaattagacatgacaatcaattttgtcagaa 11299
Query: 288 atgccatggacaattaattaaagataaaatagttttagtacaataatctgatgacacaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11300 atgccatggacaattaattaaagataaaatagttttagtacaataatctgatgacacaca 11359
Query: 348 cagaaaagggttttctttcgattaaacatgatacatataataagtcagatacaagtatat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11360 cagaaaagggttttctttcgattaaacatgatacatataataagtcagatacaagtatat 11419
Query: 408 acatatttatacatatcgacacatgtaaaaatcgcatagaaagaggattgagaaatggga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11420 acatatttatacatatcgacacatgtaaaaatcgcatagaaagaggattgagaaatggga 11479
Query: 468 acatcaaagtacagcaaaacaataggatattaagaaacatagtagacctctccaaaagaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11480 acatcaaagtacagcaaaacaataggatattaagaaacatagtagacctctccaaaagaa 11539
Query: 528 acacacacaaaataagaataattcatggaaaaaccacgaattaaaccacacttttattaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11540 acacacacaaaataagaataattcatggaaaaaccacgaattaaaccacacttttattaa 11599
Query: 588 gagagacctccaatgcaactaacagataaccccaggttgctaaaccagacccaagtctca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11600 gagagacctccaatgcaactaacagataaccccaggttgctaaaccagacccaagtctca 11659
Query: 648 taacaaaaaaaaaactttatttttttttggtagaatctctccctcaaaagaaaacagaga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11660 taacaaaaaaaaaactttatttttttttggtagaatctctccctcaaaagaaaacagaga 11719
Query: 708 gggtagagacgacacacagcacgagttacacgacgacacgacacgacacttcacactaaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11720 gggtagagacgacacacagcacgagttacacgacgacacgacacgacacttcacactaaa 11779
Query: 768 tcataactcaatataaaa-cacacggttgataataaaagtcttcaggatttgaacannaa 826
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct: 11780 tcataactcaatataaaaacacacggttgataataaaagtcttcaggattgaaacaaaaa 11839
Query: 827 aaaaacaga-cagccca-ttaacaatttca-ctgttcagaagagtttcanagaaaatttt 883
||||||||| ||||||| |||||||||||| |||||||||||||||||| |||||| |||
Sbjct: 11840 aaaaacagaacagcccaattaacaatttcaactgttcagaagagtttcaaagaaaaattt 11899
Query: 884 a-gagtgggagaaa-ggatggtttgaa-gaaata-gagaaga-taacgttt-actttaaa 937
| |||||||||||| |||||||||||| |||||| ||||||| |||||||| ||| ||||
Sbjct: 11900 aagagtgggagaaaaggatggtttgaaagaaataagagaagaataacgttttactataaa 11959
Query: 938 --cga-tttctctgcttagaacttt 959
||| |||||||||||||||||||
Sbjct: 11960 aacgactttctctgcttagaacttt 11984
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9922
Number of Sequences: 1807
Number of extensions: 9922
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)