BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA10FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1214 1606 0.0
>3x_Contig1214
Length = 6334
Score = 1606 bits (810), Expect = 0.0
Identities = 858/871 (98%), Gaps = 3/871 (0%)
Strand = Plus / Plus
Query: 88 gtttgttgctgcaggcgtacgagtaaaatgccatccaacataatggccctaaacaggcaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1635 gtttgttgctgcaggcgtacgagtaaaatgccatccaacataatggccctaaacaggcaa 1694
Query: 148 ctattaggttcataaattgccaaatggcaaactcagcatccgatgaaccgattcccatgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1695 ctattaggttcataaattgccaaatggcaaactcagcatccgatgaaccgattcccatgg 1754
Query: 208 tcgatctgaagagtaatccgaataccgagagaaaattcgaatacgcaatattccaaagta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1755 tcgatctgaagagtaatccgaataccgagagaaaattcgaatacgcaatattccaaagta 1814
Query: 268 cccaagcaacacagaatttgaatgcttctctgtaatccaataaatccataaaaatttctt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1815 cccaagcaacacagaatttgaatgcttctctgtaatccaataaatccataaaaatttctt 1874
Query: 328 tgaatctaaccaatggcattattatcaaatctctcacacctttattctggaattcttttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1875 tgaatctaaccaatggcattattatcaaatctctcacacctttattctggaattcttttc 1934
Query: 388 ctttcaagctcggtattaggtttgcacatataattgatataaatgtagtgacgaatcctg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1935 ctttcaagctcggtattaggtttgcacatataattgatataaatgtagtgacgaatcctg 1994
Query: 448 caacagtcactgccaatagaaagtccttgtttgaaggatgagaagatgcatgggtaataa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1995 caacagtcactgccaatagaaagtccttgtttgaaggatgagaagatgcatgggtaataa 2054
Query: 508 taactccaactaaagaagcgataattcccccaatatttccaacaacaagaccccaggtgc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2055 taactccaactaaagaagcgataattcccccaatatttccaacaacaagaccccaggtgc 2114
Query: 568 tgacgttaacacctcgcaacatgaccccaccttgttttgaattgtgctcatcttgtaaag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2115 tgacgttaacacctcgcaacatgaccccaccttgttttgaattgtgctcatcttgtaaag 2174
Query: 628 caagttttcttgcattcataaagacaggaatgtatgagctttcagtgatttggtatattg 687
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2175 caagttttcttgcattcataaagacagggatgtatgagctttcagtgatttggtatattg 2234
Query: 688 taccaaagcanagcataagacaatacaacactgattgctggactaaggtttgatattttt 747
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2235 ttccaaagcaaagcataagacaatacaacactgattgctggactaaggtttgatattttt 2294
Query: 748 tagtatcggataaccagtagaatggaatagcanagataccatacgatgccgttgcgccaa 807
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2295 tagtatcggataaccagtagaatggaatagcaaagataccatacgatgccgttgcgccaa 2354
Query: 808 tcattagccattttctatagttccgataatcagcgaaggccatcattaaaattgcaatcg 867
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 2355 tcattagccattttctatagtccgaataatcagcgaaggccatcattaaaattgcaatcg 2414
Query: 868 caccttctaaagacgtataaatggcctttaagtagagag-aaaagnagtgtattgaaact 926
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 2415 caccttctaaagacgtataaatggcctttaagtagagagaaaaagacgtgtattg-aact 2473
Query: 927 gtt-cgtaactaaaaataacataacagtcgt 956
||| ||||||||||| |||||||||||||||
Sbjct: 2474 gttccgtaactaaaagtaacataacagtcgt 2504
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6236
Number of Sequences: 1807
Number of extensions: 6236
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)