BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA10RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1552 0.0
>3x_Contig1617
Length = 15119
Score = 1552 bits (783), Expect = 0.0
Identities = 851/865 (98%), Gaps = 7/865 (0%)
Strand = Plus / Minus
Query: 50 atagagagcactttaaatttgtaattcaaaccaaaattgaaacagttagcctagaacgtt 109
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4636 atagagagcacttgaaatttgtaattcaaaccaaaattgaaacagttagcctagaacgtt 4577
Query: 110 gaagttaccgttgctgtcgctcagtagatttaagcactgtggtggtagcagtaaatgatt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4576 gaagttaccgttgctgtcgctcagtagatttaagcactgtggtggtagcagtaaatgatt 4517
Query: 170 gaaattgtgtgtgcaattgcagcaaacacacattaggtattgtttaaatttaaagacttt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4516 gaaattgtgtgtgcaattgcagcaaacacacattaggtattgtttaaatttaaagacttt 4457
Query: 230 tcatttttgttttttttctttatttcaaccatcatgctaattgtccttttctcgccgtaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4456 tcatttttgttttttttctttatttcaaccatcatgctaattgtccttttctcgccgtaa 4397
Query: 290 attgttcaaagaagattcatcttttctctcacgtgacttcctgggaactgctacttttat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4396 attgttcaaagaagattcatcttttctctcacgtgacttcctgggaactgctacttttat 4337
Query: 350 tgggggatgccatttgtggtgtaaggaggttggggtcggaattgatattttgggaggtaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336 tgggggatgccatttgtggtgtaaggaggttggggtcggaattgatattttgggaggtaa 4277
Query: 410 atctcaatcattgggcttttatgctcatagtaagatatatgtgtatatattgttatcata 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276 atctcaatcattgggcttttatgctcatagtaagatatatgtgtatatattgttatcata 4217
Query: 470 taggattgagaccatggtttatatagataaaaccattgtcccggcagtatttgacgagca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4216 taggattgagaccatggtttatatagataaaaccattgtcccggcagtatttgacgagca 4157
Query: 530 gcaattgggaataacttaactggaccatatctaatcaaaatcttctgacaacatagttaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4156 gcaattgggaataacttaactggaccatatctaatcaaaatcttctgacaacatagttaa 4097
Query: 590 ttaccaccctcggaatctgtgttttttgtttacttatggaccctctagcagaatataagg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4096 ttaccaccctcggaatctgtgttttttgtttacttatggaccctctagcagaatataagg 4037
Query: 650 aatcggtccaggatcgcctcgaaaaggctgacttggccgtacaaggggtgttaaacgaga 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4036 aatcggtccaggatcgcctcgaaaaggctgacttggccgtacaaggggtgttaaacgaga 3977
Query: 710 atgtgaagctgatgagacaattagagttgaaacaacaggagatagaatctttgaaggaac 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3976 atgtgaagctgatgagacaattagagttgaaacaacaggagatagaatctttgaaggaac 3917
Query: 770 aattgcaatccgataagacanagatttctcatttggaggattcgaaaagcgacgcagagg 829
|||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 3916 aattgcaatccgataagacaaagatttctcaattggaggattcgaaagcggacgcagagg 3857
Query: 830 aacaatctgagat-atgaaaga-ttattcgagcaa-tgtgtggagt-aggatacat-aga 884
||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||| |||
Sbjct: 3856 aacaatctgagataatgaaagatttattcgagcaattgtgtggagtaaggatacataaga 3797
Query: 885 c-tatga-gatgatctanggctgtg 907
| ||||| ||||||||| |||||||
Sbjct: 3796 catatgaggatgatctagggctgtg 3772
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8506
Number of Sequences: 1807
Number of extensions: 8506
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)