BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA11RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1741 0.0
>3x_Contig1536
Length = 11572
Score = 1741 bits (878), Expect = 0.0
Identities = 911/921 (98%), Gaps = 1/921 (0%)
Strand = Plus / Plus
Query: 47 cttcgtggataatgaacgagttcgtgaattaatacctcaatgtgatgttatcttaatcaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7931 cttcgtggataatgaacgagttcgtgaattaatacctcaatgtgatgttatcttaatcaa 7990
Query: 107 caactttattttcgatgctcctttgaacaaagaagtagaaaaggttgtacaaggcctcaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7991 caactttattttcgatgctcctttgaacaaagaagtagaaaaggttgtacaaggcctcaa 8050
Query: 167 ggccgggtccaagataatttctttgaaaagcatacgacctcctggttacagtttttatta 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 8051 ggccgggtccaagataatttctttgaaaagcatacgacctcctggttacagtataaatta 8110
Query: 227 cgatgacatggacaatatcttcaaccgattacatgtagagtcattcaagctccctgaaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8111 cgatgacatggacaatatcttcaaccgattacatgtagagtcattcaagctccctgaaaa 8170
Query: 287 cagtgtttcatggacctacagaagtgttggtgattattatatcagtactgtattggatgc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8171 cagtgtttcatggacctacagaagtgttggtgattattatatcagtactgtattggatgc 8230
Query: 347 aattgatgagtcgattttctgtcctccgattttaggtaggattagaaaaaaagaatcaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8231 aattgatgagtcgattttctgtcctccgattttaggtaggattagaaaaaaagaatcaat 8290
Query: 407 caagtataccagatagtaaagtcaatgctttagaccatgtcgttatttgctttacctgtg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8291 caagtataccagatagtaaagtcaatgctttagaccatgtcgttatttgctttacctgtg 8350
Query: 467 aaatagttttataagatctatttataacacaatgcaagtaatcgaatataaaaagataaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8351 aaatagttttataagatctatttataacacaatgcaagtaatcgaatataaaaagataaa 8410
Query: 527 atcaccagtaatgatacaaacagtttttttacttcttgatatgtaagttatgctaaattg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8411 atcaccagtaatgatacaaacagtttttttacttcttgatatgtaagttatgctaaattg 8470
Query: 587 cactgtttatctatgttctgtagtatagtaatcgaattaagaagctccatagagagtttt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8471 cactgtttatctatgttctgtagtatagtaatcgaattaagaagctccatagagagtttt 8530
Query: 647 aaaacgtggtttagctgggttcattttgataaagcctcttcctgaccacttaacaaagta 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8531 aaaacgtggtttagctgggttcattttgataaagcctcttcctgaccacttaacaaagta 8590
Query: 707 aaagatggtgcctgtagtttttgagtacctttcaagaaatccaactccataacgaaacag 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8591 aaagatggtgcctgtagtttttgagtacctttcaagaaatccaactccataacgaaacag 8650
Query: 767 aactccaagatgtttgcattcaactgcanagccaagtcaccggcttgctttgcggagcca 826
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 8651 aactccaagatgtttgcattcaactgcaaagccaagtcaccggctgcttttgcggagcca 8710
Query: 827 ccggtggcaatgatatcatcgacaat-acgacgtttgaatgttcagggatagaatcagcc 885
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8711 ccggtggcaatgatatcatcgacaataacgacgtttgaatgttcagggatagaatcagcc 8770
Query: 886 tggatttcgaaaacatcttcaccgtacttcttagcataaactgcgtgtacaacttcacca 945
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 8771 tggatttcgaaaacatcttcaccgtactccttagcataaactgcgtgtacaacttcacca 8830
Query: 946 gcaggcttaccttgctttctc 966
||| |||||||||||||||||
Sbjct: 8831 gcaagcttaccttgctttctc 8851
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7635
Number of Sequences: 1807
Number of extensions: 7635
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)