BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZA12FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1635 0.0
>3x_Contig1668
Length = 13429
Score = 1635 bits (825), Expect = 0.0
Identities = 871/881 (98%), Gaps = 4/881 (0%)
Strand = Plus / Minus
Query: 87 cttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaagtgctgttg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8004 cttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaagtgctgttg 7945
Query: 147 cagctccaggttactccagcacttggtctactgccgcaagtttatctactggaggtaata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7944 cagctccaggttactccagcacttggtctactgccgcaagtttatctactggaggtaata 7885
Query: 207 tcttcacagttaccaacaatgctaatggtactgtttcgactggtacaggatcttcaggct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7884 tcttcacagttaccaacaatgctaatggtactgtttcgactggtacaggatcttcaggct 7825
Query: 267 ccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttcaaaaaaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7824 ccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttcaaaaaaag 7765
Query: 327 aaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtctacttctaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7764 aaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtctacttctaa 7705
Query: 387 gtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaataaaagcaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7704 gtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaataaaagcaa 7645
Query: 447 aagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatcagaggaact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7644 aagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatcagaggaact 7585
Query: 507 tcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgtcttaattt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7584 tcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgtcttaattt 7525
Query: 567 agcacattttcggttctttgtcagatcaaagattctattgccaatagaaaccctttcact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7524 agcacattttcggttctttgtcagatcaaagattctattgccaatagaaaccctttcact 7465
Query: 627 gcccaaaaattgatgcgttgctcgatctccgttccacttgcataggaacagaaagcctat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7464 gcccaaaaattgatgcgttgctcgatctccgttccacttgcataggaacagaaagcctat 7405
Query: 687 aatcagaatttcttttaacaccctagttaattcaatttctcacataagcatactctctat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7404 aatcagaatttcttttaacaccctagttaattcaatttctcacataagcatactctctat 7345
Query: 747 caagaatattgttcaacttaccctcgaactatttcgacaggtcgagcattttatattgat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7344 caagaatattgttcaacttaccctcgaactatttcgacaggtcgagcattttatattgat 7285
Query: 807 caattgattccgattatttgtttgagtgaacaaaaatccc-accaagagacggacactat 865
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7284 caattgattccgataatttgtttgagtgaacaaaaatcccaaccaagagacggacactat 7225
Query: 866 ctttattaaactcaattcag-cccttgtccagccaatatttacagttctatgtatctttt 924
||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 7224 cttaattaaactcaa-tcagccccttgtccagccaatatttacagttctatgtatctctt 7166
Query: 925 ttaagaattatgagtttttctgta-cactattagcacataa 964
||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 7165 ttaagaattataggtttttctgtaccactataagcacataa 7125
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8007
Number of Sequences: 1807
Number of extensions: 8007
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)